Applications of next-generation sequencing technologies to diagnostic virology

L Barzon, E Lavezzo, V Militello, S Toppo… - International journal of …, 2011 - mdpi.com
Novel DNA sequencing techniques, referred to as “next-generation” sequencing (NGS),
provide high speed and throughput that can produce an enormous volume of sequences …

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data

N Beerenwinkel, HF Günthard, V Roth… - Frontiers in …, 2012 - frontiersin.org
Many viruses, including the clinically relevant RNA viruses HIV (human immunodeficiency
virus) and HCV (hepatitis C virus), exist in large populations and display high genetic …

Viral population analysis and minority-variant detection using short read next-generation sequencing

SJ Watson, MRA Welkers… - … of the Royal …, 2013 - royalsocietypublishing.org
RNA viruses within infected individuals exist as a population of evolutionary-related variants.
Owing to evolutionary change affecting the constitution of this population, the frequency …

[HTML][HTML] Next-generation sequencing technology in clinical virology

MR Capobianchi, E Giombini, G Rozera - Clinical Microbiology and …, 2013 - Elsevier
Recent advances in nucleic acid sequencing technologies, referred to as 'next-generation'
sequencing (NGS), have produced a true revolution and opened new perspectives for …

Deep sequencing: becoming a critical tool in clinical virology

ME Quiñones-Mateu, S Avila, G Reyes-Teran… - Journal of clinical …, 2014 - Elsevier
Population (Sanger) sequencing has been the standard method in basic and clinical DNA
sequencing for almost 40 years; however, next-generation (deep) sequencing …

[HTML][HTML] CCR5 targeted cell therapy for HIV and prevention of viral escape

G Hütter, J Bodor, S Ledger, M Boyd, M Millington… - Viruses, 2015 - mdpi.com
Allogeneic transplantation with CCR5-delta 32 (CCR5-d32) homozygous stem cells in an
HIV infected individual in 2008, led to a sustained virus control and probably eradication of …

Deep sequencing to infer HIV-1 co-receptor usage: application to three clinical trials of maraviroc in treatment-experienced patients

LC Swenson, T Mo, WWY Dong, X Zhong… - Journal of Infectious …, 2011 - academic.oup.com
Abstract Background. The Maraviroc versus Optimized Therapy in Viremic Antiretroviral
Treatment-Experienced Patients (MOTIVATE) studies compared maraviroc versus placebo …

Exposing malaria in-host diversity and estimating population diversity by capture-recapture using massively parallel pyrosequencing

JJ Juliano, K Porter, V Mwapasa… - Proceedings of the …, 2010 - National Acad Sciences
Malaria infections commonly contain multiple genetically distinct variants. Mathematical and
animal models suggest that interactions among these variants have a profound impact on …

Single-molecule DNA amplification and analysis using microfluidics

C Zhang, D Xing - Chemical reviews, 2010 - ACS Publications
The broad availability of amplified DNA molecules enabled the development of many
powerful applications in molecular biology techniques. Currently, a variety of DNA …

Clinical management of HIV drug resistance

KJ Cortez, F Maldarelli - Viruses, 2011 - pmc.ncbi.nlm.nih.gov
Combination antiretroviral therapy for HIV-1 infection has resulted in profound reductions in
viremia and is associated with marked improvements in morbidity and mortality. Therapy is …