A comprehensive survey on deep graph representation learning
Graph representation learning aims to effectively encode high-dimensional sparse graph-
structured data into low-dimensional dense vectors, which is a fundamental task that has …
structured data into low-dimensional dense vectors, which is a fundamental task that has …
Concepts of artificial intelligence for computer-assisted drug discovery
X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …
opportunities for the discovery and development of innovative drugs. Various machine …
Uni-mol: A universal 3d molecular representation learning framework
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …
role in learning from limited supervised data for applications like drug design. In most MRL …
Molecular contrastive learning of representations via graph neural networks
Molecular machine learning bears promise for efficient molecular property prediction and
drug discovery. However, labelled molecule data can be expensive and time consuming to …
drug discovery. However, labelled molecule data can be expensive and time consuming to …
Self-supervised graph transformer on large-scale molecular data
How to obtain informative representations of molecules is a crucial prerequisite in AI-driven
drug design and discovery. Recent researches abstract molecules as graphs and employ …
drug design and discovery. Recent researches abstract molecules as graphs and employ …
ChemBERTa: large-scale self-supervised pretraining for molecular property prediction
GNNs and chemical fingerprints are the predominant approaches to representing molecules
for property prediction. However, in NLP, transformers have become the de-facto standard …
for property prediction. However, in NLP, transformers have become the de-facto standard …
[HTML][HTML] Cryptocurrency trading: a comprehensive survey
In recent years, the tendency of the number of financial institutions to include
cryptocurrencies in their portfolios has accelerated. Cryptocurrencies are the first pure digital …
cryptocurrencies in their portfolios has accelerated. Cryptocurrencies are the first pure digital …
Smiles-bert: large scale unsupervised pre-training for molecular property prediction
With the rapid progress of AI in both academia and industry, Deep Learning has been widely
introduced into various areas in drug discovery to accelerate its pace and cut R&D costs …
introduced into various areas in drug discovery to accelerate its pace and cut R&D costs …
[HTML][HTML] Learning continuous and data-driven molecular descriptors by translating equivalent chemical representations
There has been a recent surge of interest in using machine learning across chemical space
in order to predict properties of molecules or design molecules and materials with the …
in order to predict properties of molecules or design molecules and materials with the …
DeepAffinity: interpretable deep learning of compound–protein affinity through unified recurrent and convolutional neural networks
Motivation Drug discovery demands rapid quantification of compound–protein interaction
(CPI). However, there is a lack of methods that can predict compound–protein affinity from …
(CPI). However, there is a lack of methods that can predict compound–protein affinity from …