[HTML][HTML] The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
MJ Ellington, O Ekelund, FM Aarestrup… - Clinical microbiology …, 2017 - Elsevier
Whole genome sequencing (WGS) offers the potential to predict antimicrobial susceptibility
from a single assay. The European Committee on Antimicrobial Susceptibility Testing …
from a single assay. The European Committee on Antimicrobial Susceptibility Testing …
Towards plant pangenomics
As an increasing number of genome sequences become available for a wide range of
species, there is a growing understanding that the genome of a single individual is …
species, there is a growing understanding that the genome of a single individual is …
[HTML][HTML] Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives
Acinetobacter occupies an important position in nature because of its ubiquitous presence in
diverse environments such as soils, fresh water, oceans, sediments, and contaminated sites …
diverse environments such as soils, fresh water, oceans, sediments, and contaminated sites …
Technological advances in maize breeding: past, present and future
Maize has for many decades been both one of the most important crops worldwide and one
of the primary genetic model organisms. More recently, maize breeding has been impacted …
of the primary genetic model organisms. More recently, maize breeding has been impacted …
[HTML][HTML] Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict
Horizontal DNA transfer (HDT) is a pervasive mechanism of diversification in many microbial
species, but its primary evolutionary role remains controversial. Much recent research has …
species, but its primary evolutionary role remains controversial. Much recent research has …
[HTML][HTML] Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity
JC Hyun, JM Monk, BO Palsson - BMC genomics, 2022 - Springer
Background With the exponential growth of publicly available genome sequences,
pangenome analyses have provided increasingly complete pictures of genetic diversity for …
pangenome analyses have provided increasingly complete pictures of genetic diversity for …
[HTML][HTML] SNP discovery using a pangenome: has the single reference approach become obsolete?
B Hurgobin, D Edwards - Biology, 2017 - mdpi.com
Increasing evidence suggests that a single individual is insufficient to capture the genetic
diversity within a species due to gene presence absence variation. In order to understand …
diversity within a species due to gene presence absence variation. In order to understand …
[HTML][HTML] Large-scale genomics reveals the genetic characteristics of seven species and importance of phylogenetic distance for estimating pan-genome size
For more than a decade, pan-genome analysis has been applied as an effective method for
explaining the genetic contents variation of prokaryotic species. However, genomic …
explaining the genetic contents variation of prokaryotic species. However, genomic …
[HTML][HTML] Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage
Acinetobacter baumannii is a globally distributed nosocomial pathogen that has gained
interest due to its resistance to most currently used antimicrobials. Whole genome …
interest due to its resistance to most currently used antimicrobials. Whole genome …
[HTML][HTML] Comparative genome analysis reveals niche-specific genome expansion in Acinetobacter baumannii strains
H Yakkala, D Samantarrai, M Gribskov… - PLoS One, 2019 - journals.plos.org
The nosocomial pathogen Acinetobacter baumannii acquired clinical significance due to the
rapid development of its multi-drug resistant (MDR) phenotype. A. baumannii strains have …
rapid development of its multi-drug resistant (MDR) phenotype. A. baumannii strains have …