[HTML][HTML] The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee

MJ Ellington, O Ekelund, FM Aarestrup… - Clinical microbiology …, 2017 - Elsevier
Whole genome sequencing (WGS) offers the potential to predict antimicrobial susceptibility
from a single assay. The European Committee on Antimicrobial Susceptibility Testing …

Towards plant pangenomics

AA Golicz, J Batley, D Edwards - Plant biotechnology journal, 2016 - Wiley Online Library
As an increasing number of genome sequences become available for a wide range of
species, there is a growing understanding that the genome of a single individual is …

[HTML][HTML] Acinetobacter species as model microorganisms in environmental microbiology: current state and perspectives

J Jung, W Park - Applied microbiology and biotechnology, 2015 - Springer
Acinetobacter occupies an important position in nature because of its ubiquitous presence in
diverse environments such as soils, fresh water, oceans, sediments, and contaminated sites …

Technological advances in maize breeding: past, present and future

C Andorf, WD Beavis, M Hufford, S Smith… - Theoretical and applied …, 2019 - Springer
Maize has for many decades been both one of the most important crops worldwide and one
of the primary genetic model organisms. More recently, maize breeding has been impacted …

[HTML][HTML] Horizontal DNA transfer mechanisms of bacteria as weapons of intragenomic conflict

NJ Croucher, R Mostowy, C Wymant, P Turner… - PLoS …, 2016 - journals.plos.org
Horizontal DNA transfer (HDT) is a pervasive mechanism of diversification in many microbial
species, but its primary evolutionary role remains controversial. Much recent research has …

[HTML][HTML] Comparative pangenomics: analysis of 12 microbial pathogen pangenomes reveals conserved global structures of genetic and functional diversity

JC Hyun, JM Monk, BO Palsson - BMC genomics, 2022 - Springer
Background With the exponential growth of publicly available genome sequences,
pangenome analyses have provided increasingly complete pictures of genetic diversity for …

[HTML][HTML] SNP discovery using a pangenome: has the single reference approach become obsolete?

B Hurgobin, D Edwards - Biology, 2017 - mdpi.com
Increasing evidence suggests that a single individual is insufficient to capture the genetic
diversity within a species due to gene presence absence variation. In order to understand …

[HTML][HTML] Large-scale genomics reveals the genetic characteristics of seven species and importance of phylogenetic distance for estimating pan-genome size

SC Park, K Lee, YO Kim, S Won, J Chun - Frontiers in microbiology, 2019 - frontiersin.org
For more than a decade, pan-genome analysis has been applied as an effective method for
explaining the genetic contents variation of prokaryotic species. However, genomic …

[HTML][HTML] Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage

JW Sahl, M Del Franco, S Pournaras, RE Colman… - Scientific reports, 2015 - nature.com
Acinetobacter baumannii is a globally distributed nosocomial pathogen that has gained
interest due to its resistance to most currently used antimicrobials. Whole genome …

[HTML][HTML] Comparative genome analysis reveals niche-specific genome expansion in Acinetobacter baumannii strains

H Yakkala, D Samantarrai, M Gribskov… - PLoS One, 2019 - journals.plos.org
The nosocomial pathogen Acinetobacter baumannii acquired clinical significance due to the
rapid development of its multi-drug resistant (MDR) phenotype. A. baumannii strains have …