[HTML][HTML] Gut microbiota beyond bacteria—mycobiome, virome, archaeome, and eukaryotic parasites in IBD
M Matijašić, T Meštrović, H Čipčić Paljetak… - International journal of …, 2020 - mdpi.com
The human microbiota is a diverse microbial ecosystem associated with many beneficial
physiological functions as well as numerous disease etiologies. Dominated by bacteria, the …
physiological functions as well as numerous disease etiologies. Dominated by bacteria, the …
Forgotten fungi—the gut mycobiome in human health and disease
The human body is home to a complex and diverse microbial ecosystem that plays a central
role in host health. This includes a diversity of fungal species that is collectively referred to …
role in host health. This includes a diversity of fungal species that is collectively referred to …
[HTML][HTML] Microplastics affect sedimentary microbial communities and nitrogen cycling
Microplastics are ubiquitous in estuarine, coastal, and deep sea sediments. The impacts of
microplastics on sedimentary microbial ecosystems and biogeochemical carbon and …
microplastics on sedimentary microbial ecosystems and biogeochemical carbon and …
[HTML][HTML] Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …
challenging and hampers insights into the structure and function of microbial communities …
[HTML][HTML] Bifidobacteria-mediated immune system imprinting early in life
Immune-microbe interactions early in life influence the risk of allergies, asthma, and other
inflammatory diseases. Breastfeeding guides healthier immune-microbe relationships by …
inflammatory diseases. Breastfeeding guides healthier immune-microbe relationships by …
The fungal mycobiome promotes pancreatic oncogenesis via activation of MBL
Bacterial dysbiosis accompanies carcinogenesis in malignancies such as colon and liver
cancer, and has recently been implicated in the pathogenesis of pancreatic ductal …
cancer, and has recently been implicated in the pathogenesis of pancreatic ductal …
Structure and function of the global topsoil microbiome
Soils harbour some of the most diverse microbiomes on Earth and are essential for both
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model …
nutrient cycling and carbon storage. To understand soil functioning, it is necessary to model …
Regional variation limits applications of healthy gut microbiome reference ranges and disease models
Y He, W Wu, HM Zheng, P Li, D McDonald, HF Sheng… - Nature medicine, 2018 - nature.com
Dysbiosis, departure of the gut microbiome from a healthy state, has been suggested to be a
powerful biomarker of disease incidence and progression,–. Diagnostic applications have …
powerful biomarker of disease incidence and progression,–. Diagnostic applications have …
[HTML][HTML] Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
Background The accuracy of microbial community surveys based on marker-gene and
metagenomic sequencing (MGS) suffers from the presence of contaminants—DNA …
metagenomic sequencing (MGS) suffers from the presence of contaminants—DNA …
Identification of environmental factors that promote intestinal inflammation
Genome-wide association studies have identified risk loci linked to inflammatory bowel
disease (IBD)—a complex chronic inflammatory disorder of the gastrointestinal tract. The …
disease (IBD)—a complex chronic inflammatory disorder of the gastrointestinal tract. The …