The use of next generation sequencing for improving food safety: Translation into practice

B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet… - Food …, 2019 - Elsevier
Abstract Next Generation Sequencing (NGS) combined with powerful bioinformatic
approaches are revolutionising food microbiology. Whole genome sequencing (WGS) of …

Population genomics of bacterial host adaptation

SK Sheppard, DS Guttman, JR Fitzgerald - Nature Reviews Genetics, 2018 - nature.com
Some bacteria can transfer to new host species, and this poses a risk to human health.
Indeed, an estimated 60% of all human pathogens have originated from other animal …

Campylobacter jejuni: collective components promoting a successful enteric lifestyle

PM Burnham, DR Hendrixson - Nature Reviews Microbiology, 2018 - nature.com
Campylobacter jejuni is the leading cause of bacterial diarrhoeal disease in many areas of
the world. The high incidence of sporadic cases of disease in humans is largely due to its …

Genome-wide association studies in plant pathosystems: toward an ecological genomics approach

C Bartoli, F Roux - Frontiers in plant science, 2017 - frontiersin.org
The emergence and re-emergence of plant pathogenic microorganisms are processes that
imply perturbations in both host and pathogen ecological niches. Global change is largely …

Molecular detection and characterization of foodborne bacteria: Recent progresses and remaining challenges

J Hadi, D Rapp, S Dhawan, SK Gupta… - … Reviews in Food …, 2023 - Wiley Online Library
The global food demand is expected to increase in the coming years, along with challenges
around climate change and food security. Concomitantly, food safety risks, particularly those …

Next-generation microbiology: from comparative genomics to gene function

CM Kobras, AK Fenton, SK Sheppard - Genome Biology, 2021 - Springer
Microbiology is at a turning point in its 120-year history. Widespread next-generation
sequencing has revealed genetic complexity among bacteria that could hardly have been …

Integrating whole-genome sequencing data into quantitative risk assessment of foodborne antimicrobial resistance: a review of opportunities and challenges

L Collineau, P Boerlin, CA Carson… - Frontiers in …, 2019 - frontiersin.org
Whole-genome sequencing (WGS) will soon replace traditional phenotypic methods for
routine testing of foodborne antimicrobial resistance (AMR). WGS is expected to improve …

Genome-wide identification of host-segregating epidemiological markers for source attribution in Campylobacter jejuni

A Thépault, G Méric, K Rivoal, B Pascoe… - Applied and …, 2017 - Am Soc Microbiol
Campylobacter is among the most common worldwide causes of bacterial gastroenteritis.
This organism is part of the commensal microbiota of numerous host species, including …

[HTML][HTML] A systematic review of source attribution of human campylobacteriosis using multilocus sequence typing

AJ Cody, MCJ Maiden, NJC Strachan… - …, 2019 - eurosurveillance.org
Background Campylobacter is a leading global cause of bacterial gastroenteritis, motivating
research to identify sources of human infection. Population genetic studies have been …

Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease

E Mourkas, D Florez‐Cuadrado… - Environmental …, 2019 - Wiley Online Library
The use of antimicrobials in human and veterinary medicine has coincided with a rise in
antimicrobial resistance (AMR) in the food‐borne pathogens Campylobacter jejuni and …