Microbiomes in light of traits: a phylogenetic perspective

JBH Martiny, SE Jones, JT Lennon, AC Martiny - Science, 2015 - science.org
BACKGROUND Microbial communities—microbiomes—are intricately linked to human
health and critical ecosystem services. New technologies allow the rapid characterization of …

Marine actinomycetes, new sources of biotechnological products

SV Jagannathan, EM Manemann, SE Rowe… - Marine Drugs, 2021 - mdpi.com
The Actinomycetales order is one of great genetic and functional diversity, including diversity
in the production of secondary metabolites which have uses in medical, environmental …

Implications of streamlining theory for microbial ecology

SJ Giovannoni, J Cameron Thrash… - The ISME …, 2014 - academic.oup.com
Whether a small cell, a small genome or a minimal set of chemical reactions with self-
replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said,'simplicity …

Metagenome-assembled genomes uncover a global brackish microbiome

LW Hugerth, J Larsson, J Alneberg, MV Lindh… - Genome biology, 2015 - Springer
Background Microbes are main drivers of biogeochemical cycles in oceans and lakes.
Although the genome is a foundation for understanding the metabolism, ecology and …

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity

KT Jurdzinski, M Mehrshad, LF Delgado, Z Deng… - Science …, 2023 - science.org
The crossing of environmental barriers poses major adaptive challenges. Rareness of
freshwater-marine transitions separates the bacterial communities, but how these are …

Key roles for freshwater A ctinobacteria revealed by deep metagenomic sequencing

R Ghai, CM Mizuno, A Picazo, A Camacho… - Molecular …, 2014 - Wiley Online Library
Freshwater ecosystems are critical but fragile environments directly affecting society and its
welfare. However, our understanding of genuinely freshwater microbial communities …

People, pollution and pathogens–Global change impacts in mountain freshwater ecosystems

DS Schmeller, A Loyau, K Bao, W Brack… - Science of the Total …, 2018 - Elsevier
Mountain catchments provide for the livelihood of more than half of humankind, and have
become a key destination for tourist and recreation activities globally. Mountain ecosystems …

Metagenomic characterization of biofilter microbial communities in a full-scale drinking water treatment plant

S Oh, F Hammes, WT Liu - Water research, 2018 - Elsevier
Microorganisms inhabiting filtration media of a drinking water treatment plant can be
beneficial, because they metabolize biodegradable organic matter from source waters and …

Functional tradeoffs underpin salinity-driven divergence in microbial community composition

CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll… - PloS one, 2014 - journals.plos.org
Bacterial community composition and functional potential change subtly across gradients in
the surface ocean. In contrast, while there are significant phylogenetic divergences between …

Metagenomic insights into microbial adaptation to the salinity gradient of a typical short residence-time estuary

Z Wu, M Li, L Qu, C Zhang, W Xie - Microbiome, 2024 - Springer
Background Microbial adaptation to salinity has been a classic inquiry in the field of
microbiology. It has been demonstrated that microorganisms can endure salinity stress via …