Advances in AP2/ERF super-family transcription factors in plant

K Feng, XL Hou, GM Xing, JX Liu… - Critical reviews in …, 2020 - Taylor & Francis
In the whole life process, many factors including external and internal factors affect plant
growth and development. The morphogenesis, growth, and development of plants are …

Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

Mapping genome-wide transcription-factor binding sites using DAP-seq

A Bartlett, RC O'Malley, SC Huang, M Galli, JR Nery… - Nature protocols, 2017 - nature.com
To enable low-cost, high-throughput generation of cistrome and epicistrome maps for any
organism, we developed DNA affinity purification sequencing (DAP-seq), a transcription …

Function of alternative splicing

O Kelemen, P Convertini, Z Zhang, Y Wen, M Shen… - Gene, 2013 - Elsevier
Almost all polymerase II transcripts undergo alternative pre-mRNA splicing. Here, we review
the functions of alternative splicing events that have been experimentally determined. The …

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

M Lechner, S Findeiß, L Steiner, M Marz, PF Stadler… - BMC …, 2011 - Springer
Background Orthology analysis is an important part of data analysis in many areas of
bioinformatics such as comparative genomics and molecular phylogenetics. The ever …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches

M Chen, JL Manley - Nature reviews Molecular cell biology, 2009 - nature.com
Alternative splicing of mRNA precursors provides an important means of genetic control and
is a crucial step in the expression of most genes. Alternative splicing markedly affects human …

STING and the innate immune response to nucleic acids in the cytosol

DL Burdette, RE Vance - Nature immunology, 2013 - nature.com
Cytosolic detection of pathogen-derived nucleic acids is critical for the initiation of innate
immune defense against diverse bacterial, viral and eukaryotic pathogens. Conversely …

The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity

X Lu, F Sachs, LA Ramsay, PÉ Jacques… - Nature structural & …, 2014 - nature.com
Human endogenous retrovirus subfamily H (HERVH) is a class of transposable elements
expressed preferentially in human embryonic stem cells (hESCs). Here, we report that the …

Network motifs: theory and experimental approaches

U Alon - Nature Reviews Genetics, 2007 - nature.com
Transcription regulation networks control the expression of genes. The transcription
networks of well-studied microorganisms appear to be made up of a small set of recurring …