Instrumentation at the leading edge of proteomics

TM Peters-Clarke, JJ Coon, NM Riley - Analytical Chemistry, 2024 - ACS Publications
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …

Functionalizing tandem mass tags for streamlining click-based quantitative chemoproteomics

NR Burton, KM Backus - Communications Chemistry, 2024 - nature.com
Mapping the ligandability or potential druggability of all proteins in the human proteome is a
central goal of mass spectrometry-based covalent chemoproteomics. Achieving this …

Achieving a 35-Plex Tandem Mass Tag Reagent Set through Deuterium Incorporation

NR Zuniga, DC Frost, K Kuhn, M Shin… - Journal of Proteome …, 2024 - ACS Publications
Mass spectrometry-based sample multiplexing with isobaric tags permits the development of
high-throughput and precise quantitative biological assays with proteome-wide coverage …

[HTML][HTML] CySP3-96 enables scalable, streamlined, and low-cost sample preparation for cysteine chemoproteomic applications

F Shikwana, BS Heydari, S Ofori, C Truong… - Molecular & Cellular …, 2024 - Elsevier
Cysteine chemoproteomic screening platforms are widely utilized for chemical probe and
drug discovery campaigns. Chemoproteomic compound screens, which use a mass …

[HTML][HTML] Pervasive aggregation and depletion of host and viral proteins in response to cysteine-reactive electrophilic compounds

AR Julio, F Shikwana, C Truong, NR Burton… - BioRxiv, 2023 - ncbi.nlm.nih.gov
Protein homeostasis is tightly regulated, with damaged or misfolded proteins quickly
eliminated by the proteasome and autophagosome pathways. By co-opting these …

Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data Acquisition

K Yang, JA Paulo, SP Gygi, Q Yu - Journal of the American …, 2024 - ACS Publications
Targeted proteomics has been playing an increasingly important role in hypothesis-driven
protein research and clinical biomarker discovery. We previously created a workflow …

Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Activated Ion-Tandem Mass Tags (AI-TMT)

T Peters-Clarke, Y Liang, KL Mertz, KW Lee… - bioRxiv, 2024 - biorxiv.org
Single-cell proteomics is a powerful approach to precisely profile protein landscapes within
individual cells toward a comprehensive understanding of proteomic functions and tissue …

sCIP-ing towards streamlined chemoproteomics

N Burton, KM Backus - 2023 - chemrxiv.org
Mapping the ligandability or potential druggability of all proteins in the human proteome is a
central goal of mass spectrometry-based chemoproteomics. Achieving this ambitious …

Analysis of FAIMS for the Study of Affinity-Purified Protein Complexes Using the Orbitrap Ascend Tribrid Mass Spectrometer

P Goswami, J Cesare, M Rekowski, Z Clark, J Thornton… - bioRxiv, 2024 - biorxiv.org
In this study, we analyzed the combination of affinity purification mass spectrometry (AP-MS)
with high-field asymmetric waveform ion mobility spectrometry (FAIMS), integrated between …

Improvements in glycoproteomics through architecture changes to the Orbitrap Tribrid MS platform

TS Veth, E Sutherland, KA Markuson, R Zhang… - 2024 - chemrxiv.org
Hardware changes introduced on the Orbitrap Ascend MultiOmics Tribrid MS include dual
ion routing multipoles (IRMs) that can enable parallelized accumulation, dissociation, and …