Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
Functionalizing tandem mass tags for streamlining click-based quantitative chemoproteomics
Mapping the ligandability or potential druggability of all proteins in the human proteome is a
central goal of mass spectrometry-based covalent chemoproteomics. Achieving this …
central goal of mass spectrometry-based covalent chemoproteomics. Achieving this …
Achieving a 35-Plex Tandem Mass Tag Reagent Set through Deuterium Incorporation
Mass spectrometry-based sample multiplexing with isobaric tags permits the development of
high-throughput and precise quantitative biological assays with proteome-wide coverage …
high-throughput and precise quantitative biological assays with proteome-wide coverage …
[HTML][HTML] CySP3-96 enables scalable, streamlined, and low-cost sample preparation for cysteine chemoproteomic applications
F Shikwana, BS Heydari, S Ofori, C Truong… - Molecular & Cellular …, 2024 - Elsevier
Cysteine chemoproteomic screening platforms are widely utilized for chemical probe and
drug discovery campaigns. Chemoproteomic compound screens, which use a mass …
drug discovery campaigns. Chemoproteomic compound screens, which use a mass …
[HTML][HTML] Pervasive aggregation and depletion of host and viral proteins in response to cysteine-reactive electrophilic compounds
AR Julio, F Shikwana, C Truong, NR Burton… - BioRxiv, 2023 - ncbi.nlm.nih.gov
Protein homeostasis is tightly regulated, with damaged or misfolded proteins quickly
eliminated by the proteasome and autophagosome pathways. By co-opting these …
eliminated by the proteasome and autophagosome pathways. By co-opting these …
Enhanced Sample Multiplexing-Based Targeted Proteomics with Intelligent Data Acquisition
Targeted proteomics has been playing an increasingly important role in hypothesis-driven
protein research and clinical biomarker discovery. We previously created a workflow …
protein research and clinical biomarker discovery. We previously created a workflow …
Boosting the Sensitivity of Quantitative Single-Cell Proteomics with Activated Ion-Tandem Mass Tags (AI-TMT)
Single-cell proteomics is a powerful approach to precisely profile protein landscapes within
individual cells toward a comprehensive understanding of proteomic functions and tissue …
individual cells toward a comprehensive understanding of proteomic functions and tissue …
Analysis of FAIMS for the Study of Affinity-Purified Protein Complexes Using the Orbitrap Ascend Tribrid Mass Spectrometer
P Goswami, J Cesare, M Rekowski, Z Clark, J Thornton… - bioRxiv, 2024 - biorxiv.org
In this study, we analyzed the combination of affinity purification mass spectrometry (AP-MS)
with high-field asymmetric waveform ion mobility spectrometry (FAIMS), integrated between …
with high-field asymmetric waveform ion mobility spectrometry (FAIMS), integrated between …
Improvements in glycoproteomics through architecture changes to the Orbitrap Tribrid MS platform
TS Veth, E Sutherland, KA Markuson, R Zhang… - 2024 - chemrxiv.org
Hardware changes introduced on the Orbitrap Ascend MultiOmics Tribrid MS include dual
ion routing multipoles (IRMs) that can enable parallelized accumulation, dissociation, and …
ion routing multipoles (IRMs) that can enable parallelized accumulation, dissociation, and …