Bioremediation mechanisms of combined pollution of PAHs and heavy metals by bacteria and fungi: a mini review

SH Liu, GM Zeng, QY Niu, Y Liu, L Zhou, LH Jiang… - Bioresource …, 2017 - Elsevier
In recent years, knowledge in regard to bioremediation of combined pollution of polycyclic
aromatic hydrocarbons (PAHs) and heavy metals by bacteria and fungi has been widely …

The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection

S Tsuji, T Takahara, H Doi, N Shibata… - Environmental …, 2019 - Wiley Online Library
The field of environmental DNA (eDNA) analysis has rapidly developed over the past
decade and the technique has become widely used for detecting aquatic macroorganisms in …

Optimizing techniques to capture and extract environmental DNA for detection and quantification of fish

JJ Eichmiller, LM Miller… - Molecular ecology …, 2016 - Wiley Online Library
Few studies have examined capture and extraction methods for environmental DNA (eDNA)
to identify techniques optimal for detection and quantification. In this study, precipitation …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

Human fecal contamination of water, soil, and surfaces in households sharing poor-quality sanitation facilities in Maputo, Mozambique

DA Holcomb, J Knee, T Sumner, Z Adriano… - International Journal of …, 2020 - Elsevier
Identifying the origin of fecal contamination can support more effective interventions to
interrupt enteric pathogen transmission. Microbial source tracking (MST) assays may help to …

Solid state anaerobic digestion of food waste and sewage sludge: Impact of mixing ratios and temperature on microbial diversity, reactor stability and methane yield

V Arelli, NK Mamindlapelli, S Begum… - Science of the Total …, 2021 - Elsevier
Food waste (FW) and sewage sludge (SS) were anaerobically co digested under solid state
conditions (Total solids> 15%) and observed that mixing ratio of 3: 1 and 2: 1 is optimum for …

The quest for absolute abundance: The use of internal standards for DNA‐based community ecology

JG Harrison, W John Calder, B Shuman… - Molecular Ecology …, 2021 - Wiley Online Library
To characterize microbiomes and other ecological assemblages, ecologists routinely
sequence and compare loci that differ among focal taxa. Counts of these sequences convey …

Metagenomic analysis of a southern maritime Antarctic soil

DA Pearce, KK Newsham, MAS Thorne… - Frontiers in …, 2012 - frontiersin.org
Our current understanding of Antarctic soils is derived from direct culture on selective media,
biodiversity studies based on clone library construction and analysis, quantitative PCR …

[PDF][PDF] Assessment of fecal DNA extraction protocols for metagenomic studies

F Yang, J Sun, H Luo, H Ren, H Zhou, Y Lin… - …, 2020 - academic.oup.com
Background Shotgun metagenomic sequencing has improved our understanding of the
human gut microbiota. Various DNA extraction methods have been compared to find …

Exploring the root microbiome: extracting bacterial community data from the soil, rhizosphere, and root endosphere

T Simmons, DF Caddell, S Deng… - Journal of visualized …, 2018 - pmc.ncbi.nlm.nih.gov
The intimate interaction between plant host and associated microorganisms is crucial in
determining plant fitness, and can foster improved tolerance to abiotic stresses and …