[HTML][HTML] Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
S Reyes-Chin-Wo, Z Wang, X Yang, A Kozik… - Nature …, 2017 - nature.com
Lettuce (Lactuca sativa) is a major crop and a member of the large, highly successful
Compositae family of flowering plants. Here we present a reference assembly for the …
Compositae family of flowering plants. Here we present a reference assembly for the …
Brachypodium distachyon as a Genetic Model System
EA Kellogg - Annual Review of Genetics, 2015 - annualreviews.org
Brachypodium distachyon has emerged as a powerful model system for studying the
genetics of flowering plants. Originally chosen for its phylogenetic proximity to the large …
genetics of flowering plants. Originally chosen for its phylogenetic proximity to the large …
Enhanced resistance to bacterial and oomycete pathogens by short tandem target mimic RNAs in tomato
A Canto-Pastor, BAMC Santos… - Proceedings of the …, 2019 - National Acad Sciences
Nucleotide binding site leucine-rich repeat (NLR) proteins of the plant innate immune
system are negatively regulated by the miR482/2118 family miRNAs that are in a distinct 22 …
system are negatively regulated by the miR482/2118 family miRNAs that are in a distinct 22 …
Reproductive phasiRNAs regulate reprogramming of gene expression and meiotic progression in rice
YC Zhang, MQ Lei, YF Zhou, YW Yang, JP Lian… - Nature …, 2020 - nature.com
Plant spermatogenesis is a complex process that directly affects crop breeding. A rapid
change in gene abundance occurs at early meiosis prophase, when gene regulation is …
change in gene abundance occurs at early meiosis prophase, when gene regulation is …
MicroRNA-guided regulation of heat stress response in wheat
S Ravichandran, R Ragupathy, T Edwards… - BMC genomics, 2019 - Springer
Background With rising global temperature, understanding plants' adaptation to heat stress
has implications in plant breeding. MicroRNAs (miRNAs) are small, non-coding, regulatory …
has implications in plant breeding. MicroRNAs (miRNAs) are small, non-coding, regulatory …
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
Small RNAs are ubiquitous, versatile repressors and include (1) microRNAs (miRNAs),
processed from mRNA forming stem-loops; and (2) small interfering RNAs (siRNAs), the …
processed from mRNA forming stem-loops; and (2) small interfering RNAs (siRNAs), the …
TarDB: an online database for plant miRNA targets and miRNA-triggered phased siRNAs
J Liu, X Liu, S Zhang, S Liang, W Luan, X Ma - BMC genomics, 2021 - Springer
Abstract Background In plants, microRNAs (miRNAs) are pivotal regulators of plant
development and stress responses. Different computational tools and web servers have …
development and stress responses. Different computational tools and web servers have …
Computational tools for plant small RNA detection and categorization
L Morgado, F Johannes - Briefings in Bioinformatics, 2019 - academic.oup.com
Small RNAs (sRNAs) are important short-length molecules with regulatory functions
essential for plant development and plasticity. High-throughput sequencing of total sRNA …
essential for plant development and plasticity. High-throughput sequencing of total sRNA …
In silico analysis of fungal small RNA accumulation reveals putative plant mRNA targets in the symbiosis between an arbuscular mycorrhizal fungus and its host plant
Abstract Background Small RNAs (sRNAs) are short non-coding RNA molecules (20–30 nt)
that regulate gene expression at transcriptional or post-transcriptional levels in many …
that regulate gene expression at transcriptional or post-transcriptional levels in many …
Premeiotic 24-nt phasiRNAs are present in the Zea genus and unique in biogenesis mechanism and molecular function
Reproductive phasiRNAs (phased, small interfering RNAs) are broadly present in
angiosperms and play crucial roles in sustaining male fertility. While the premeiotic 21-nt …
angiosperms and play crucial roles in sustaining male fertility. While the premeiotic 21-nt …