[HTML][HTML] New whole-genome alignment tools are needed for tapping into plant diversity
B Song, ES Buckler, MC Stitzer - Trends in Plant Science, 2023 - cell.com
Genome alignment is one of the most foundational methods for genome sequence studies.
With rapid advances in sequencing and assembly technologies, these newly assembled …
With rapid advances in sequencing and assembly technologies, these newly assembled …
Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
Are cereal grasses a single genetic system?
In 1993, a passionate and provocative call to arms urged cereal researchers to consider the
taxon they study as a single genetic system and collaborate with each other. Since then, that …
taxon they study as a single genetic system and collaborate with each other. Since then, that …
NGenomeSyn: an easy-to-use and flexible tool for publication-ready visualization of syntenic relationships across multiple genomes
W He, J Yang, Y Jing, L Xu, K Yu, X Fang - Bioinformatics, 2023 - academic.oup.com
Large-scale comparative genomic studies have provided important insights into species
evolution and diversity, but also lead to a great challenge to visualize. Quick catching or …
evolution and diversity, but also lead to a great challenge to visualize. Quick catching or …
[HTML][HTML] Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
Peatlands are crucial sinks for atmospheric carbon but are critically threatened due to
warming climates. Sphagnum (peat moss) species are keystone members of peatland …
warming climates. Sphagnum (peat moss) species are keystone members of peatland …
[HTML][HTML] The complex polyploid genome architecture of sugarcane
Sugarcane, the world's most harvested crop by tonnage, has shaped global history, trade
and geopolitics, and is currently responsible for 80% of sugar production worldwide. While …
and geopolitics, and is currently responsible for 80% of sugar production worldwide. While …
[HTML][HTML] Genome analyses reveal population structure and a purple stigma color gene candidate in finger millet
Finger millet is a key food security crop widely grown in eastern Africa, India and Nepal.
Long considered a 'poor man's crop', finger millet has regained attention over the past …
Long considered a 'poor man's crop', finger millet has regained attention over the past …
Genomic hotspots of chromosome rearrangements explain conserved synteny despite high rates of chromosome evolution in a holocentric lineage
Holocentric organisms, unlike typical monocentric organisms, have kinetochore activity
distributed along almost the whole length of the chromosome. Because of this, chromosome …
distributed along almost the whole length of the chromosome. Because of this, chromosome …
[HTML][HTML] Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa
Abstract Background Muscadine grape (Vitis rotundifolia) is resistant to many of the
pathogens that negatively impact the production of common grape (V. vinifera), including the …
pathogens that negatively impact the production of common grape (V. vinifera), including the …
[HTML][HTML] The genome of the glasshouse plant noble rhubarb (Rheum nobile) provides a window into alpine adaptation
Glasshouse plants are species that trap warmth via specialized morphology and physiology,
mimicking a human glasshouse. In the Himalayan alpine region, the highly specialized …
mimicking a human glasshouse. In the Himalayan alpine region, the highly specialized …