Executable cancer models: successes and challenges
Making decisions on how best to treat cancer patients requires the integration of different
data sets, including genomic profiles, tumour histopathology, radiological images, proteomic …
data sets, including genomic profiles, tumour histopathology, radiological images, proteomic …
Data integration in logic-based models of biological mechanisms
BA Hall, A Niarakis - Current Opinion in Systems Biology, 2021 - Elsevier
Discrete, logic-based models are increasingly used to describe biological mechanisms.
Initially introduced to study gene regulation, these models evolved to cover various …
Initially introduced to study gene regulation, these models evolved to cover various …
HOXA9 has the hallmarks of a biological switch with implications in blood cancers
L Talarmain, MA Clarke, D Shorthouse… - Nature …, 2022 - nature.com
Blood malignancies arise from the dysregulation of haematopoiesis. The type of blood cell
and the specific order of oncogenic events initiating abnormal growth ultimately determine …
and the specific order of oncogenic events initiating abnormal growth ultimately determine …
Verifiable biology
S Konur, M Gheorghe… - Journal of the Royal …, 2023 - royalsocietypublishing.org
The formalization of biological systems using computational modelling approaches as an
alternative to mathematical-based methods has recently received much interest because …
alternative to mathematical-based methods has recently received much interest because …
Constructing and analyzing computational models of cell signaling with biomodelanalyzer
BioModelAnalyzer (BMA) is an open‐source graphical tool for the development of
executable models of protein and gene networks within cells. Based upon the Qualitative …
executable models of protein and gene networks within cells. Based upon the Qualitative …
Modelling timing in blood cancers
L Talarmain - 2021 - repository.cam.ac.uk
Dysregulation of biological processes in normal cells can lead to the abnormal growth of
tumours. Oncogenesis requires the acquisition of advantageous mutations to expand in a …
tumours. Oncogenesis requires the acquisition of advantageous mutations to expand in a …
A review of modelling and verification approaches for computational biology
S Konur - 2020 - bradscholars.brad.ac.uk
This paper reviews most frequently used computational modelling approaches and formal
verification techniques in computational biology. The paper also compares a number of …
verification techniques in computational biology. The paper also compares a number of …
HOXA9 acts as a regulatory switch in acute myeloid leukaemia and myeloproliferative neoplasms
Blood malignancies arise from the dysregulation of haematopoiesis. The type of blood cell
and the specific order of oncogenic events initiating abnormal growth ultimately determine …
and the specific order of oncogenic events initiating abnormal growth ultimately determine …