Crop breeding chips and genotyping platforms: progress, challenges, and perspectives

A Rasheed, Y Hao, X Xia, A Khan, Y Xu, RK Varshney… - Molecular plant, 2017 - cell.com
There is a rapidly rising trend in the development and application of molecular marker
assays for gene mapping and discovery in field crops and trees. Thus far, more than 50 SNP …

Exploiting wild relatives for genomics-assisted breeding of perennial crops

Z Migicovsky, S Myles - Frontiers in Plant Science, 2017 - frontiersin.org
Perennial crops are vital contributors to global food production and nutrition. However, the
breeding of new perennial crops is an expensive and time-consuming process due to the …

High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development

N Daccord, JM Celton, G Linsmith, C Becker… - Nature …, 2017 - nature.com
Using the latest sequencing and optical mapping technologies, we have produced a high-
quality de novo assembly of the apple (Malus domestica Borkh.) genome. Repeat …

15 years of GDR: New data and functionality in the Genome Database for Rosaceae

S Jung, T Lee, CH Cheng, K Buble… - Nucleic acids …, 2019 - academic.oup.com
Abstract The Genome Database for Rosaceae (GDR, https://www. rosaceae. org) is an
integrated web-based community database resource providing access to publicly available …

The Peach v2. 0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity

I Verde, J Jenkins, L Dondini, S Micali, G Pagliarani… - BMC genomics, 2017 - Springer
Background The availability of the peach genome sequence has fostered relevant research
in peach and related Prunus species enabling the identification of genes underlying …

Development and evaluation of a barley 50k iSelect SNP array

MM Bayer, P Rapazote-Flores, M Ganal… - Frontiers in plant …, 2017 - frontiersin.org
High-throughput genotyping arrays continue to be an attractive, cost-effective alternative to
sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect …

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research

MK Tello-Ruiz, S Naithani, P Gupta… - Nucleic Acids …, 2021 - academic.oup.com
Abstract Gramene (http://www. gramene. org), a knowledgebase founded on comparative
functional analyses of genomic and pathway data for model plants and major crops …

Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array

Q You, X Yang, Z Peng, L Xu, J Wang - Frontiers in Plant Science, 2018 - frontiersin.org
Polypoid species play significant roles in agriculture and food production. Many crop
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …

Apple whole genome sequences: recent advances and new prospects

CP Peace, L Bianco, M Troggio… - Horticulture …, 2019 - academic.oup.com
In 2010, a major scientific milestone was achieved for tree fruit crops: publication of the first
draft whole genome sequence (WGS) for apple (Malus domestica). This WGS, v1. 0, was …

Current and future trends in the biocontrol of postharvest diseases

X Li, S Zeng, M Wisniewski, S Droby, L Yu… - Critical Reviews in …, 2024 - Taylor & Francis
Postharvest diseases of fruits and vegetables cause significant economic losses to
producers and marketing firms. Many of these diseases are caused by necrotrophic fungal …