Signaling and gene expression in skeletal muscles in type 2 diabetes: current results and OMICS perspectives

AV Vorotnikov, DV Popov, PA Makhnovskii - Biochemistry (Moscow), 2022 - Springer
Skeletal muscles mainly contribute to the emergence of insulin resistance, impaired glucose
tolerance and the development of type 2 diabetes. Molecular mechanisms that regulate …

SignalingProfiler 2.0 a network-based approach to bridge multi-omics data to phenotypic hallmarks

V Venafra, F Sacco, L Perfetto - npj Systems Biology and Applications, 2024 - nature.com
Unraveling how cellular signaling is remodeled upon perturbation is crucial for
understanding disease mechanisms and identifying potential drug targets. In this pursuit …

Time and dose selective glucose metabolism for glucose homeostasis and energy conversion in the liver

Y Pan, A Hatano, S Ohno, K Morita, T Kokaji… - npj Systems Biology …, 2024 - nature.com
Hepatic glucose metabolism serves dual purposes: maintaining glucose homeostasis and
converting glucose into energy sources; however, the underlying mechanisms are unclear …

[HTML][HTML] Trans-omic analysis reveals opposite metabolic dysregulation between feeding and fasting in liver associated with obesity

Y Bai, K Morita, T Kokaji, A Hatano, S Ohno, R Egami… - Iscience, 2024 - cell.com
Dysregulation of liver metabolism associated with obesity during feeding and fasting leads
to the breakdown of metabolic homeostasis. However, the underlying mechanism remains …

Bistable insulin response: The win-win solution for glycemic control

J Akhtar, Y Han, S Han, W Lin, C Cao, R Ge… - Iscience, 2022 - cell.com
To satisfy both the safety and rapidity of glycemic control, muscles' insulin response must be
bistable, as theoretically predicted. Here, we test the bistability hypothesis by combining …

A sneak peek into chronic glucose exposure and insulin secretion impairment through translatome

GA Helena, S Kume - Journal of Diabetes Investigation, 2024 - Wiley Online Library
Diabetes is an epidemic caused by a multitude of factors. Despite the studies attempting to
unravel its mechanism, there is still more to discover about glucose–insulin dynamics. In a …

Modeling causal signal propagation in multi-omic factor space with COSMOS

A Dugourd, P Lafrenz, D Mañanes, V Paton… - bioRxiv, 2024 - biorxiv.org
Understanding complex diseases requires approaches that jointly analyze omic data across
multiple biological layers, including signaling, gene regulation, and metabolism. Existing …

[HTML][HTML] Gene model for the ortholog of Myc in Drosophila eugracilis

ME Lawson, A Hoffman, IG Wellik… - Micropublication …, 2024 - ncbi.nlm.nih.gov
Gene model for the ortholog of Myc (Myc) in the D. eugracilis Apr. 2013 (BCM-
HGSC/Deug_2. 0)(DeugGB2) Genome Assembly (GenBank Accession: GCA_000236325 …