Transcription factories: genome organization and gene regulation
A Papantonis, PR Cook - Chemical reviews, 2013 - ACS Publications
All eukaryotic cells contain four RNA polymerases originally defined by their sensitivity to
different drugs, and now by the sets of genes they transcribe. 1− 4 Polymerase I produces …
different drugs, and now by the sets of genes they transcribe. 1− 4 Polymerase I produces …
Use of matrix attachment regions (MARs) to minimize transgene silencing
GC Allen, S Spiker, WF Thompson - Plant Gene Silencing, 2000 - Springer
Matrix attachment regions (MARs) are operationally defined as DNA elements that bind
specifically to the nuclear matrix in vitro. It is possible, although unproven, that they also …
specifically to the nuclear matrix in vitro. It is possible, although unproven, that they also …
RNA polymerase II associates with active genes during DNA replication
TK Fenstermaker, S Petruk, SK Kovermann, HW Brock… - Nature, 2023 - nature.com
The transcriptional machinery is thought to dissociate from DNA during replication. Certain
proteins, termed epigenetic marks, must be transferred from parent to daughter DNA strands …
proteins, termed epigenetic marks, must be transferred from parent to daughter DNA strands …
The DNA sequence and biological annotation of human chromosome 1
SG Gregory, KF Barlow, KE McLay, R Kaul… - Nature, 2006 - nature.com
The reference sequence for each human chromosome provides the framework for
understanding genome function, variation and evolution. Here we report the finished …
understanding genome function, variation and evolution. Here we report the finished …
Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains
CA Brackley, J Johnson, S Kelly, PR Cook… - Nucleic acids …, 2016 - academic.oup.com
Biophysicists are modeling conformations of interphase chromosomes, often basing the
strengths of interactions between segments distant on the genetic map on contact …
strengths of interactions between segments distant on the genetic map on contact …
Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing
We report the genome-wide mapping of ORC1 binding sites in mammals, by chromatin
immunoprecipitation and parallel sequencing (ChIP-seq). ORC1 binding sites in HeLa cells …
immunoprecipitation and parallel sequencing (ChIP-seq). ORC1 binding sites in HeLa cells …
Segregation of transcription and replication sites into higher order domains
X Wei, J Samarabandu, RS Devdhar, AJ Siegel… - Science, 1998 - science.org
Microscopy shows that individual sites of DNA replication and transcription of mammalian
nuclei segregate into sets of roughly 22 and 16 higher order domains, respectively. Each …
nuclei segregate into sets of roughly 22 and 16 higher order domains, respectively. Each …
[HTML][HTML] CpG islands as genomic footprints of promoters that are associated with replication origins
F Antequera, A Bird - Current Biology, 1999 - cell.com
The primary target for DNA methylation in mammalian genomes is cytosine in the
dinucleotide CpG. High densities of CpG dinucleotides are found in CpG islands, but …
dinucleotide CpG. High densities of CpG dinucleotides are found in CpG islands, but …
Specific interactions of chromatin with the nuclear envelope: positional determination within the nucleus in Drosophila melanogaster.
WF Marshall, AF Dernburg, B Harmon… - Molecular biology of …, 1996 - Am Soc Cell Biol
Specific interactions of chromatin with the nuclear envelope (NE) in early embryos of
Drosophila melanogaster have been mapped and analyzed. Using fluorescence in situ …
Drosophila melanogaster have been mapped and analyzed. Using fluorescence in situ …
Replication and transcription: shaping the landscape of the genome
L Chakalova, E Debrand, JA Mitchell… - Nature Reviews …, 2005 - nature.com
As the relationship between nuclear structure and function begins to unfold, a picture is
emerging of a dynamic landscape that is centred on the two main processes that execute the …
emerging of a dynamic landscape that is centred on the two main processes that execute the …