[HTML][HTML] CLIP and complementary methods

M Hafner, M Katsantoni, T Köster, J Marks… - Nature Reviews …, 2021 - nature.com
RNA molecules start assembling into ribonucleoprotein (RNP) complexes during
transcription. Dynamic RNP assembly, largely directed by cis-acting elements on the RNA …

Drug–target interaction prediction: databases, web servers and computational models

X Chen, CC Yan, X Zhang, X Zhang, F Dai… - Briefings in …, 2016 - academic.oup.com
Identification of drug–target interactions is an important process in drug discovery. Although
high-throughput screening and other biological assays are becoming available …

[HTML][HTML] Information fusion as an integrative cross-cutting enabler to achieve robust, explainable, and trustworthy medical artificial intelligence

A Holzinger, M Dehmer, F Emmert-Streib, R Cucchiara… - Information …, 2022 - Elsevier
Medical artificial intelligence (AI) systems have been remarkably successful, even
outperforming human performance at certain tasks. There is no doubt that AI is important to …

One thousand plant transcriptomes and the phylogenomics of green plants

Nature, 2019 - nature.com
Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Bacterial gasdermins reveal an ancient mechanism of cell death

AG Johnson, T Wein, ML Mayer, B Duncan-Lowey… - Science, 2022 - science.org
Gasdermin proteins form large membrane pores in human cells that release immune
cytokines and induce lytic cell death. Gasdermin pore formation is triggered by caspase …

A survey of large language models for healthcare: from data, technology, and applications to accountability and ethics

K He, R Mao, Q Lin, Y Ruan, X Lan, M Feng… - arXiv preprint arXiv …, 2023 - arxiv.org
The utilization of large language models (LLMs) in the Healthcare domain has generated
both excitement and concern due to their ability to effectively respond to freetext queries with …

[HTML][HTML] Molecular diversity of midbrain development in mouse, human, and stem cells

G La Manno, D Gyllborg, S Codeluppi, K Nishimura… - Cell, 2016 - cell.com
Understanding human embryonic ventral midbrain is of major interest for Parkinson's
disease. However, the cell types, their gene expression dynamics, and their relationship to …

Fast and sensitive protein alignment using DIAMOND

B Buchfink, C Xie, DH Huson - Nature methods, 2015 - nature.com
The alignment of sequencing reads against a protein reference database is a major
computational bottleneck in metagenomics and data-intensive evolutionary projects …

A survey on semantic processing techniques

R Mao, K He, X Zhang, G Chen, J Ni, Z Yang… - Information …, 2024 - Elsevier
Semantic processing is a fundamental research domain in computational linguistics. In the
era of powerful pre-trained language models and large language models, the advancement …

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

W Kim, RS Underwood, I Greenwald, DD Shaye - Genetics, 2018 - academic.oup.com
OrthoList, a compendium of Caenorhabditis elegans genes with human orthologs compiled
in 2011 by a meta-analysis of four orthology-prediction methods, has been a popular tool for …