With the arrival of telomere-to-telomere (T2T) assemblies of the human genome comes the
computational challenge of efficiently and accurately constructing multiple genome …

Sequence alignment is a common and often repeated task in molecular biology. Typical
alignment operations consist of finding similarities between a pair of sequences (pairwise …

Computational molecular science is a very computationally intense discipline, and the use of
parallel programming and high‐performance computers well established as being …

Motivation: Protein structure alignment is key for transferring information from well-studied
proteins to less studied ones. Structural alignment identifies the most precise mapping of …

Bioinformatics is an interdisciplinary field that applies trending techniques in information
technology, mathematics, and statistics in studying large biological data. Bioinformatics …

Activity based costing (ABC) has revolutionized product costing, planning, and forecasting in
the last decade. It is based on a philosophy of estimation that:" it is better to be …

Abstract Algebraic Dynamic Programming (ADP) is a framework to encode a broad range of
optimization problems, including common bioinformatics problems like RNA folding or …

The Viterbi algorithm is the compute-intensive kernel in Hidden Markov Model (HMM) based
sequence alignment applications. In this paper, we investigate extending several parallel …

Using modern graphics processing units for no-graphics high performance computing is
motivated by their enhanced programmability, attractive price/performance ratio and …

Sequence comparison problems such as sequence alignment and approximate string
matching are part of the fundamental problems in many fields such as natural language …