[HTML][HTML] CRISPR-based genome editing through the lens of DNA repair

TS Nambiar, L Baudrier, P Billon, A Ciccia - Molecular cell, 2022 - cell.com
Genome editing technologies operate by inducing site-specific DNA perturbations that are
resolved by cellular DNA repair pathways. Products of genome editors include DNA breaks …

[HTML][HTML] Emergent CRISPR–Cas-based technologies for engineering non-model bacteria

DC Volke, E Orsi, PI Nikel - Current Opinion in Microbiology, 2023 - Elsevier
Highlights•CRISPR–Cas systems promoted the engineering of non-model bacteria.•Tools
include genome modifications and finely-tuned transcriptional regulation.•CRISPR–Cas …

Continuous synthesis of E. coli genome sections and Mb-scale human DNA assembly

JF Zürcher, AA Kleefeldt, LFH Funke, J Birnbaum… - Nature, 2023 - nature.com
Whole-genome synthesis provides a powerful approach for understanding and expanding
organism function,–. To build large genomes rapidly, scalably and in parallel, we need (1) …

Engineering the plastid and mitochondrial genomes of flowering plants

P Maliga - Nature Plants, 2022 - nature.com
Engineering the plastid genome based on homologous recombination is well developed in
a few model species. Homologous recombination is also the rule in mitochondria, but …

The expanded CRISPR toolbox for constructing microbial cell factories

Y Teng, T Jiang, Y Yan - Trends in Biotechnology, 2024 - cell.com
Microbial cell factories (MCFs) convert low-cost carbon sources into valuable compounds.
The CRISPR/Cas9 system has revolutionized MCF construction as a remarkable genome …

Towards next-generation cell factories by rational genome-scale engineering

S Yilmaz, A Nyerges, J van der Oost, GM Church… - Nature Catalysis, 2022 - nature.com
Metabolic engineering holds the promise to transform the chemical industry and to support
the transition into a circular bioeconomy, by engineering cellular biocatalysts that efficiently …

[HTML][HTML] Current advancement in the application of prime editing

Z Huang, G Liu - Frontiers in Bioengineering and Biotechnology, 2023 - frontiersin.org
Prime editing (PE) is a precise genome manipulation technology based on the “search and
replace” approach of the CRISPR-Cas9 system, while it does not require the exogenous …

Retron-mediated multiplex genome editing and continuous evolution in Escherichia coli

W Liu, S Zuo, Y Shao, K Bi, J Zhao… - Nucleic Acids …, 2023 - academic.oup.com
While there are several genome editing techniques available, few are suitable for dynamic
and simultaneous mutagenesis of arbitrary targeted sequences in prokaryotes. Here, to …

Genetically engineered bacteria: a new frontier in targeted drug delivery

S Fooladi, N Rabiee, S Iravani - Journal of Materials Chemistry B, 2023 - pubs.rsc.org
Genetically engineered bacteria (GEB) have shown significant promises to revolutionize
modern medicine. These engineered bacteria with unique properties such as enhanced …

[HTML][HTML] Prime editing: An all-rounder for genome editing

C Lu, J Kuang, T Shao, S Xie, M Li, L Zhu… - International Journal of …, 2022 - mdpi.com
Prime editing (PE), as a “search-and-replace” genome editing technology, has shown the
attractive potential of versatile genome editing ability, which is, in principle, currently …