Free resources to assist structure-based virtual ligand screening experiments

BO Villoutreix, N Renault, D Lagorce… - Current Protein and …, 2007 - ingentaconnect.com
In today's research environment, a wealth of experimental/theoretical structural data is
available and the number of therapeutically relevant macromolecular structures is growing …

Direct protein interaction underlies gene-for-gene specificity and coevolution of the flax resistance genes and flax rust avirulence genes

PN Dodds, GJ Lawrence… - Proceedings of the …, 2006 - National Acad Sciences
Plant resistance proteins (R proteins) recognize corresponding pathogen avirulence (Avr)
proteins either indirectly through detection of changes in their host protein targets or through …

Servers for protein structure prediction

D Fischer - Current opinion in structural biology, 2006 - Elsevier
The 1990s cultivated a generation of protein structure human predictors. As a result of
structural genomics and genome sequencing projects, and significant improvements in the …

[HTML][HTML] Use of malaria rapid diagnostic test to identify Plasmodium knowlesi infection

TF McCutchan, RC Piper, MT Makler - Emerging infectious …, 2008 - ncbi.nlm.nih.gov
Reports of human infection with Plasmodium knowlesi, a monkey malaria, suggest that it
and other nonhuman malaria species may be an emerging health problem. We report the …

Hydrolysis of cyclic poly(ethylene terephthalate) trimers by a carboxylesterase from Thermobifida fusca KW3

S Billig, T Oeser, C Birkemeyer… - Applied microbiology and …, 2010 - Springer
We have identified a carboxylesterase produced in liquid cultures of the thermophilic
actinomycete Thermobifida fusca KW3 that were supplemented with poly (ethylene …

ESCRT ubiquitin-binding domains function cooperatively during MVB cargo sorting

SB Shields, AJ Oestreich, S Winistorfer… - Journal of Cell …, 2009 - rupress.org
Ubiquitin (Ub) sorting receptors facilitate the targeting of ubiquitinated membrane proteins
into multivesicular bodies (MVBs). Ub-binding domains (UBDs) have been described in …

Quantitative in vivo Analyses Reveal Calcium-dependent Phosphorylation Sites and Identifies a Novel Component of the Toxoplasma Invasion Motor Complex

T Nebl, JH Prieto, E Kapp, BJ Smith, MJ Williams… - PLoS …, 2011 - journals.plos.org
Apicomplexan parasites depend on the invasion of host cells for survival and proliferation.
Calcium-dependent signaling pathways appear to be essential for micronemal release and …

Automated server predictions in CASP7

JND Battey, J Kopp, L Bordoli, RJ Read… - Proteins: Structure …, 2007 - Wiley Online Library
With each round of CASP (Critical Assessment of Techniques for Protein Structure
Prediction), automated prediction servers have played an increasingly important role. Today …

Gene Gain and Gene Loss in Streptococcus: Is It Driven by Habitat?

PR Marri, W Hao, GB Golding - Molecular biology and evolution, 2006 - academic.oup.com
Bacterial genomes can evolve either by gene gain, gene loss, mutating existing genes,
and/or by duplication of existing genes. Recent studies have clearly demonstrated that the …

A multi-template combination algorithm for protein comparative modeling

J Cheng - BMC structural biology, 2008 - Springer
Background Multiple protein templates are commonly used in manual protein structure
prediction. However, few automated algorithms of selecting and combining multiple …