Next-generation sequencing technologies: An overview
T Hu, N Chitnis, D Monos, A Dinh - Human Immunology, 2021 - Elsevier
Since the days of Sanger sequencing, next-generation sequencing technologies have
significantly evolved to provide increased data output, efficiencies, and applications. These …
significantly evolved to provide increased data output, efficiencies, and applications. These …
[HTML][HTML] Best practices for variant calling in clinical sequencing
DC Koboldt - Genome Medicine, 2020 - Springer
Next-generation sequencing technologies have enabled a dramatic expansion of clinical
genetic testing both for inherited conditions and diseases such as cancer. Accurate variant …
genetic testing both for inherited conditions and diseases such as cancer. Accurate variant …
STK11/LKB1 Mutations and PD-1 Inhibitor Resistance in KRAS-Mutant Lung Adenocarcinoma
F Skoulidis, ME Goldberg, DM Greenawalt… - Cancer discovery, 2018 - AACR
KRAS is the most common oncogenic driver in lung adenocarcinoma (LUAC). We previously
reported that STK11/LKB1 (KL) or TP53 (KP) comutations define distinct subgroups of KRAS …
reported that STK11/LKB1 (KL) or TP53 (KP) comutations define distinct subgroups of KRAS …
Hyperprogressors after immunotherapy: analysis of genomic alterations associated with accelerated growth rate
S Kato, A Goodman, V Walavalkar, DA Barkauskas… - Clinical Cancer …, 2017 - AACR
Purpose: Checkpoint inhibitors demonstrate salutary anticancer effects, including long-term
remissions. PD-L1 expression/amplification, high mutational burden, and mismatch repair …
remissions. PD-L1 expression/amplification, high mutational burden, and mismatch repair …
Integrative clinical genomics of metastatic cancer
Metastasis is the primary cause of cancer-related deaths. Although The Cancer Genome
Atlas has sequenced primary tumour types obtained from surgical resections, much less …
Atlas has sequenced primary tumour types obtained from surgical resections, much less …
The emerging clinical relevance of genomics in cancer medicine
The combination of next-generation sequencing and advanced computational data analysis
approaches has revolutionized our understanding of the genomic underpinnings of cancer …
approaches has revolutionized our understanding of the genomic underpinnings of cancer …
A molecularly integrated grade for meningioma
Background Meningiomas are the most common primary intracranial tumor in adults.
Clinical care is currently guided by the World Health Organization (WHO) grade assigned to …
Clinical care is currently guided by the World Health Organization (WHO) grade assigned to …
The Fanconi anemia pathway in cancer
J Niraj, A Färkkilä, AD D'Andrea - Annual review of cancer …, 2019 - annualreviews.org
Fanconi anemia (FA) is a complex genetic disorder characterized by bone marrow failure
(BMF), congenital defects, inability to repair DNA interstrand cross-links (ICLs), and cancer …
(BMF), congenital defects, inability to repair DNA interstrand cross-links (ICLs), and cancer …
[HTML][HTML] The genetic evolution of melanoma from precursor lesions
Background The pathogenic mutations in melanoma have been largely catalogued;
however, the order of their occurrence is not known. Methods We sequenced 293 cancer …
however, the order of their occurrence is not known. Methods We sequenced 293 cancer …
Homologous recombination deficiency: exploiting the fundamental vulnerability of ovarian cancer
PA Konstantinopoulos, R Ceccaldi, GI Shapiro… - Cancer discovery, 2015 - AACR
Approximately 50% of epithelial ovarian cancers (EOC) exhibit defective DNA repair via
homologous recombination (HR) due to genetic and epigenetic alterations of HR pathway …
homologous recombination (HR) due to genetic and epigenetic alterations of HR pathway …