RNA dynamics by NMR spectroscopy
M Marušič, J Schlagnitweit, K Petzold - ChemBioChem, 2019 - Wiley Online Library
An ever‐increasing number of functional RNAs require a mechanistic understanding. RNA
function relies on changes in its structure, so‐called dynamics. To reveal dynamic processes …
function relies on changes in its structure, so‐called dynamics. To reveal dynamic processes …
Structure and mechanism of purine-binding riboswitches
RT Batey - Quarterly reviews of biophysics, 2012 - cambridge.org
A riboswitch is a non-protein coding sequence capable of directly binding a small molecule
effector without the assistance of accessory proteins to regulate expression of the mRNA in …
effector without the assistance of accessory proteins to regulate expression of the mRNA in …
Perspective on the future role of aptamers in analytical chemistry
It has been almost 30 years since the invention of Systematic Evolution of Ligands by
Exponential Enrichment (SELEX) methodology and the description of the first aptamers. In …
Exponential Enrichment (SELEX) methodology and the description of the first aptamers. In …
Divalent cation dependence enhances dopamine aptamer biosensing
Oligonucleotide receptors (aptamers), which change conformation upon target recognition,
enable electronic biosensing under high ionic-strength conditions when coupled to field …
enable electronic biosensing under high ionic-strength conditions when coupled to field …
Mg2+ Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection
KC Suddala, J Wang, Q Hou… - Journal of the American …, 2015 - ACS Publications
Bacterial riboswitches couple small-molecule ligand binding to RNA conformational
changes that widely regulate gene expression, rendering them potential targets for antibiotic …
changes that widely regulate gene expression, rendering them potential targets for antibiotic …
Sensitive assay of Escherichia coli in food samples by microchip capillary electrophoresis based on specific aptamer binding strategy
Y Zhang, L Zhu, P He, F Zi, X Hu, Q Wang - Talanta, 2019 - Elsevier
The rapid and cost-effective detection of bacteria is of great importance to ensuring food
safety, preventing food poisoning. Herein, we developed a sensitive detection of Escherichia …
safety, preventing food poisoning. Herein, we developed a sensitive detection of Escherichia …
A sensitive assay based on specific aptamer binding for the detection of Salmonella enterica serovar Typhimurium in milk samples by microchip capillary …
Y Zhang, F Luo, Y Zhang, L Zhu, Y Li, S Zhao… - … of Chromatography A, 2018 - Elsevier
The detection of Salmonella enterica serovar Typhimurium (S. Typhimurium) is very
important for the prevention of food poisoning and other infectious diseases. Here we …
important for the prevention of food poisoning and other infectious diseases. Here we …
SILCS-RNA: Toward a structure-based drug design approach for targeting RNAs with small molecules
AA Kognole, A Hazel… - Journal of chemical theory …, 2022 - ACS Publications
RNA molecules can act as potential drug targets in different diseases, as their dysregulated
expression or misfolding can alter various cellular processes. Noncoding RNAs account …
expression or misfolding can alter various cellular processes. Noncoding RNAs account …
Multiple conformational states of riboswitches fine-tune gene regulation
B Fürtig, S Nozinovic, A Reining, H Schwalbe - Current opinion in structural …, 2015 - Elsevier
Highlights•Riboswitches exhibit multiple conformations in the absence of cognate
ligand.•Multi-conformational state mechanisms fine-tune gene-regulation.•Conformational …
ligand.•Multi-conformational state mechanisms fine-tune gene-regulation.•Conformational …
A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition
P St-Pierre, E Shaw, S Jacques… - Nucleic Acids …, 2021 - academic.oup.com
Riboswitches are RNA sequences that regulate gene expression by undergoing structural
changes upon the specific binding of cellular metabolites. Crystal structures of purine …
changes upon the specific binding of cellular metabolites. Crystal structures of purine …