RNA dynamics by NMR spectroscopy

M Marušič, J Schlagnitweit, K Petzold - ChemBioChem, 2019 - Wiley Online Library
An ever‐increasing number of functional RNAs require a mechanistic understanding. RNA
function relies on changes in its structure, so‐called dynamics. To reveal dynamic processes …

Structure and mechanism of purine-binding riboswitches

RT Batey - Quarterly reviews of biophysics, 2012 - cambridge.org
A riboswitch is a non-protein coding sequence capable of directly binding a small molecule
effector without the assistance of accessory proteins to regulate expression of the mRNA in …

Perspective on the future role of aptamers in analytical chemistry

Y Wu, I Belmonte, KS Sykes, Y Xiao… - Analytical …, 2019 - ACS Publications
It has been almost 30 years since the invention of Systematic Evolution of Ligands by
Exponential Enrichment (SELEX) methodology and the description of the first aptamers. In …

Divalent cation dependence enhances dopamine aptamer biosensing

N Nakatsuka, JM Abendroth, KA Yang… - ACS applied materials …, 2021 - ACS Publications
Oligonucleotide receptors (aptamers), which change conformation upon target recognition,
enable electronic biosensing under high ionic-strength conditions when coupled to field …

Mg2+ Shifts Ligand-Mediated Folding of a Riboswitch from Induced-Fit to Conformational Selection

KC Suddala, J Wang, Q Hou… - Journal of the American …, 2015 - ACS Publications
Bacterial riboswitches couple small-molecule ligand binding to RNA conformational
changes that widely regulate gene expression, rendering them potential targets for antibiotic …

Sensitive assay of Escherichia coli in food samples by microchip capillary electrophoresis based on specific aptamer binding strategy

Y Zhang, L Zhu, P He, F Zi, X Hu, Q Wang - Talanta, 2019 - Elsevier
The rapid and cost-effective detection of bacteria is of great importance to ensuring food
safety, preventing food poisoning. Herein, we developed a sensitive detection of Escherichia …

A sensitive assay based on specific aptamer binding for the detection of Salmonella enterica serovar Typhimurium in milk samples by microchip capillary …

Y Zhang, F Luo, Y Zhang, L Zhu, Y Li, S Zhao… - … of Chromatography A, 2018 - Elsevier
The detection of Salmonella enterica serovar Typhimurium (S. Typhimurium) is very
important for the prevention of food poisoning and other infectious diseases. Here we …

SILCS-RNA: Toward a structure-based drug design approach for targeting RNAs with small molecules

AA Kognole, A Hazel… - Journal of chemical theory …, 2022 - ACS Publications
RNA molecules can act as potential drug targets in different diseases, as their dysregulated
expression or misfolding can alter various cellular processes. Noncoding RNAs account …

Multiple conformational states of riboswitches fine-tune gene regulation

B Fürtig, S Nozinovic, A Reining, H Schwalbe - Current opinion in structural …, 2015 - Elsevier
Highlights•Riboswitches exhibit multiple conformations in the absence of cognate
ligand.•Multi-conformational state mechanisms fine-tune gene-regulation.•Conformational …

A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition

P St-Pierre, E Shaw, S Jacques… - Nucleic Acids …, 2021 - academic.oup.com
Riboswitches are RNA sequences that regulate gene expression by undergoing structural
changes upon the specific binding of cellular metabolites. Crystal structures of purine …