Modulation of cellular processes by histone and non-histone protein acetylation

M Shvedunova, A Akhtar - Nature reviews Molecular cell biology, 2022 - nature.com
Lysine acetylation is a widespread and versatile protein post-translational modification.
Lysine acetyltransferases and lysine deacetylases catalyse the addition or removal …

What is a transcriptional burst?

E Tunnacliffe, JR Chubb - Trends in Genetics, 2020 - cell.com
The idea that gene activity can be discontinuous will not surprise many biologists–many
genes are restricted in when and where they can be expressed. Yet during the past 15 …

Transcription organizes euchromatin via microphase separation

L Hilbert, Y Sato, K Kuznetsova, T Bianucci… - Nature …, 2021 - nature.com
In eukaryotes, DNA is packed inside the cell nucleus in the form of chromatin, which consists
of DNA, proteins such as histones, and RNA. Euchromatin, which is permissive for …

[HTML][HTML] The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

L Miao, Y Tang, AR Bonneau, SH Chan, ML Kojima… - Molecular Cell, 2022 - cell.com
Upon fertilization, embryos undergo chromatin reprogramming and genome activation;
however, the mechanisms that regulate these processes are poorly understood. Here, we …

Brainstem circuits encoding start, speed, and duration of swimming in adult zebrafish

EM Berg, L Mrowka, M Bertuzzi, D Madrid, LD Picton… - Neuron, 2023 - cell.com
The flexibility of locomotor movements requires an accurate control of their start, duration,
and speed. How brainstem circuits encode and convey these locomotor parameters remains …

RNA polymerase II clusters form in line with surface condensation on regulatory chromatin

A Pancholi, T Klingberg, W Zhang, R Prizak… - Molecular systems …, 2021 - embopress.org
It is essential for cells to control which genes are transcribed into RNA. In eukaryotes, two
major control points are recruitment of RNA polymerase II (Pol II) into a paused state, and …

SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis

P Bhat, LE Cabrera-Quio, VA Herzog, N Fasching… - Cell Reports, 2023 - cell.com
The maternal-to-zygotic transition (MZT) is a key developmental process in metazoan
embryos that involves the activation of zygotic transcription (ZGA) and degradation of …

[HTML][HTML] Rebooting the epigenomes during mammalian early embryogenesis

W Xia, W Xie - Stem cell reports, 2020 - cell.com
Upon fertilization, terminally differentiated gametes are transformed to a totipotent zygote,
which gives rise to an embryo. How parental epigenetic memories are inherited and …

Real-time single-molecule imaging of transcriptional regulatory networks in living cells

DW Hwang, A Maekiniemi, RH Singer… - Nature Reviews …, 2024 - nature.com
Gene regulatory networks drive the specific transcriptional programmes responsible for the
diversification of cell types during the development of multicellular organisms. Although our …

The Yin and Yang of histone marks in transcription

PB Talbert, S Henikoff - Annual review of genomics and human …, 2021 - annualreviews.org
Nucleosomes wrap DNA and impede access for the machinery of transcription. The core
histones that constitute nucleosomes are subject to a diversity of posttranslational …