VoxelEmbed: 3D instance segmentation and tracking with voxel embedding based deep learning
Recent advances in bioimaging have provided scientists a superior high spatial-temporal
resolution to observe dynamics of living cells as 3D volumetric videos. Unfortunately, the 3D …
resolution to observe dynamics of living cells as 3D volumetric videos. Unfortunately, the 3D …
Dense functional and molecular readout of a circuit hub in sensory cortex
C Condylis, A Ghanbari, N Manjrekar, K Bistrong… - Science, 2022 - science.org
INTRODUCTION The diversity of cell types is a defining feature of the neuronal circuitry that
makes up the areas and layers of the mammalian cortex. At a molecular level, the extent of …
makes up the areas and layers of the mammalian cortex. At a molecular level, the extent of …
Large-scale multi-hypotheses cell tracking using ultrametric contours maps
In this work, we describe a method for large-scale 3D cell-tracking through a segmentation
selection approach. The proposed method is effective at tracking cells across large …
selection approach. The proposed method is effective at tracking cells across large …
Dual-task ConvLSTM-UNet for instance segmentation of weakly annotated microscopy videos
Convolutional Neural Networks (CNNs) are considered state of the art segmentation
methods for biomedical images in general and microscopy sequences of living cells, in …
methods for biomedical images in general and microscopy sequences of living cells, in …
Tracking cells and their lineages via labeled random finite sets
Determining the trajectories of cells and their lineages or ancestries in live-cell experiments
are fundamental to the understanding of how cells behave and divide. This paper proposes …
are fundamental to the understanding of how cells behave and divide. This paper proposes …
MaxSigNet: Light learnable layer for semantic cell segmentation
R Yazdi, H Khotanlou - Biomedical Signal Processing and Control, 2024 - Elsevier
Semantic segmentation of cells is the entry point to other areas of cell analysis such as
instance segmentation, cell detection, Mitosis detection, and cell tracking. This paper …
instance segmentation, cell detection, Mitosis detection, and cell tracking. This paper …
A survey on automated cell tracking: challenges and solutions
R Yazdi, H Khotanlou - Multimedia Tools and Applications, 2024 - Springer
Cell tracking in microscopy images is fundamental to new biological and medical
discoveries today. It facilitates the study of the properties of living cells over time. Due to the …
discoveries today. It facilitates the study of the properties of living cells over time. Due to the …
A collagen-based microwell migration assay to study NK-target cell interactions
PE Olofsson, L Brandt, KEG Magnusson, T Frisk… - Scientific reports, 2019 - nature.com
Natural killer (NK) cell cytotoxicity in tissue is dependent on the ability of NK cells to migrate
through the extracellular matrix (ECM) microenvironment. Traditional imaging studies of NK …
through the extracellular matrix (ECM) microenvironment. Traditional imaging studies of NK …
Inference on an interacting diffusion system with application to in vitro glioblastoma migration
G Lindwall, P Gerlee - … Medicine and Biology: A Journal of the …, 2024 - academic.oup.com
Glioblastoma multiforme is a highly aggressive form of brain cancer, with a median survival
time for diagnosed patients of 15 months. Treatment of this cancer is typically a combination …
time for diagnosed patients of 15 months. Treatment of this cancer is typically a combination …
Siamese tracking of cell behaviour patterns
Tracking and segmentation of biological cells in video sequences is a challenging problem,
especially due to the similarity of the cells and high levels of inherent noise. Most machine …
especially due to the similarity of the cells and high levels of inherent noise. Most machine …