The new (dis) order in RNA regulation

AI Järvelin, M Noerenberg, I Davis… - Cell Communication and …, 2016 - Springer
RNA-binding proteins play a key role in the regulation of all aspects of RNA metabolism,
from the synthesis of RNA to its decay. Protein-RNA interactions have been thought to be …

The ins and outs of lncRNA structure: How, why and what comes next?

AJ Blythe, AH Fox, CS Bond - Biochimica et Biophysica Acta (BBA)-Gene …, 2016 - Elsevier
The field of structural biology has the unique advantage of being able to provide a
comprehensive picture of biological mechanisms at the molecular and atomic level. Long …

Structured states of disordered proteins from genomic sequences

A Toth-Petroczy, P Palmedo, J Ingraham, TA Hopf… - Cell, 2016 - cell.com
Protein flexibility ranges from simple hinge movements to functional disorder. Around half of
all human proteins contain apparently disordered regions with little 3D or functional …

Native top-down mass spectrometry uncovers two distinct binding motifs of a functional neomycin-sensing riboswitch aptamer

SV Heel, K Bartosik, F Juen, C Kreutz… - Journal of the …, 2023 - ACS Publications
Understanding how ligands bind to ribonucleic acids (RNA) is important for understanding
RNA recognition in biological processes and drug development. Here, we have studied …

HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry

VV Pham, C Salguero, SN Khan, JL Meagher… - Nature …, 2018 - nature.com
The HIV Tat protein competes with the 7SK: HEXIM interaction to hijack pTEFb from 7SK
snRNP and recruit it to the TAR motif on stalled viral transcripts. Here we solve structures of …

Small molecules targeting viral RNA

G Mathez, V Cagno - International Journal of Molecular Sciences, 2023 - mdpi.com
The majority of antivirals available target viral proteins; however, RNA is emerging as a new
and promising antiviral target due to the presence of highly structured RNA in viral genomes …

[HTML][HTML] HIV Rev assembly on the Rev response element (RRE): a structural perspective

JW Rausch, SFJ Le Grice - Viruses, 2015 - mdpi.com
HIV-1 Rev is an~ 13 kD accessory protein expressed during the early stage of virus
replication. After translation, Rev enters the nucleus and binds the Rev response element …

HIV Rev-isited

CTS Truman, A Järvelin, I Davis… - Open Biology, 2020 - royalsocietypublishing.org
The human immunodeficiency virus type 1 (HIV-1) proteome is expressed from alternatively
spliced and unspliced genomic RNAs. However, HIV-1 RNAs that are not fully spliced are …

The HIV-1 Rev response element (RRE) adopts alternative conformations that promote different rates of virus replication

C Sherpa, JW Rausch, SFJ Le Grice… - Nucleic acids …, 2015 - academic.oup.com
The HIV Rev protein forms a complex with a 351 nucleotide sequence present in unspliced
and incompletely spliced human immunodeficiency virus (HIV) mRNAs, the Rev response …

Human retrovirus genomic RNA packaging

HM Hanson, NA Willkomm, H Yang, LM Mansky - Viruses, 2022 - mdpi.com
Two non-covalently linked copies of the retrovirus genome are specifically recruited to the
site of virus particle assembly and packaged into released particles. Retroviral RNA …