[HTML][HTML] Co-evolution of strain design methods based on flux balance and elementary mode analysis
D Machado, MJ Herrgård - Metabolic Engineering Communications, 2015 - Elsevier
More than a decade ago, the first genome-scale metabolic models for two of the most
relevant microbes for biotechnology applications, Escherichia coli and Saccaromyces …
relevant microbes for biotechnology applications, Escherichia coli and Saccaromyces …
Iterative algorithm-guided design of massive strain libraries, applied to itaconic acid production in yeast
Metabolic engineering requires multiple rounds of strain construction to evaluate alternative
pathways and enzyme concentrations. Optimizing multigene pathways stepwise or by …
pathways and enzyme concentrations. Optimizing multigene pathways stepwise or by …
Biochemical and spectroscopic characterization of the non-heme Fe (II)-and 2-oxoglutarate-dependent ethylene-forming enzyme from Pseudomonas syringae pv …
S Martinez, RP Hausinger - Biochemistry, 2016 - ACS Publications
The ethylene-forming enzyme (EFE) from Pseudomonas syringae pv. phaseolicola PK2 is a
member of the mononuclear non-heme Fe (II)-and 2-oxoglutarate (2OG)-dependent …
member of the mononuclear non-heme Fe (II)-and 2-oxoglutarate (2OG)-dependent …
Complex systems in metabolic engineering
Metabolic engineers manipulate intricate biological networks to build efficient biological
machines. The inherent complexity of this task, derived from the extensive and often …
machines. The inherent complexity of this task, derived from the extensive and often …
CRISPR gene perturbations provide insights for improving bacterial biofuel tolerance
PB Otoupal, A Chatterjee - Frontiers in bioengineering and …, 2018 - frontiersin.org
Economically-viable biofuel production is often limited by low levels of microbial tolerance to
high biofuel concentrations. Here we demonstrate the first application of deactivated …
high biofuel concentrations. Here we demonstrate the first application of deactivated …
Software applications for phenotype analysis and strain design of cellular systems
M Lakshmanan, L Koduru… - Emerging Areas in …, 2018 - Wiley Online Library
Constraint‐based reconstruction and analysis (COBRA) is one of the most widely used
modeling approaches for describing and simulating cellular systems in silico. It has been …
modeling approaches for describing and simulating cellular systems in silico. It has been …
Metabolic modeling for design of cell factories
M Tian, P Kumar, STP Gupta, JL Reed - Systems Biology, 2017 - Wiley Online Library
There has been a steep rise in the number of genome‐scale metabolic models that are
available. These models have been a popular choice for designing cell factories given the …
available. These models have been a popular choice for designing cell factories given the …
Genome‐Scale Metabolic Modeling and In silico Strain Design of Escherichia coli
The Escherichia coli metabolism was modeled at the genome scale for the first time more
than a decade ago. Since then, the E. coli genome‐scale models (GEMs) have been …
than a decade ago. Since then, the E. coli genome‐scale models (GEMs) have been …
Correction: CONSTRICTOR: Constraint Modification Provides Insight into Design of Biochemical Networks
PLOS ONE Staff - Plos one, 2014 - journals.plos.org
Correction: CONSTRICTOR: Constraint Modification Provides Insight into Design of
Biochemical Networks Page 1 Correction Correction: CONSTRICTOR: Constraint …
Biochemical Networks Page 1 Correction Correction: CONSTRICTOR: Constraint …
[PDF][PDF] IMPROVED DIFFERENTIAL SEARCH ALGORITHMS FOR METABOLIC NETWORK OPTIMIZATION
KBM DAUD - 2019 - eprints.utm.my
The capabilities of Escherichia coli and Zymomonas mobilis to efficiently converting
substrate into valuable metabolites have caught the attention of many industries. However …
substrate into valuable metabolites have caught the attention of many industries. However …