A brief history of protein sorting prediction
Ever since the signal hypothesis was proposed in 1971, the exact nature of signal peptides
has been a focus point of research. The prediction of signal peptides and protein subcellular …
has been a focus point of research. The prediction of signal peptides and protein subcellular …
[HTML][HTML] Recent advances in developing web-servers for predicting protein attributes
KC Chou, HB Shen - Natural science, 2009 - scirp.org
Recent advance in large-scale genome se-quencing has generated a huge volume of pro-
tein sequences. In order to timely utilize the in-formation hidden in these newly discovered …
tein sequences. In order to timely utilize the in-formation hidden in these newly discovered …
Improved prediction of signal peptides: SignalP 3.0
We describe improvements of the currently most popular method for prediction of classically
secreted proteins, SignalP. SignalP consists of two different predictors based on neural …
secreted proteins, SignalP. SignalP consists of two different predictors based on neural …
Prediction of protein subcellular localization
Because the protein's function is usually related to its subcellular localization, the ability to
predict subcellular localization directly from protein sequences will be useful for inferring …
predict subcellular localization directly from protein sequences will be useful for inferring …
Predicting subcellular localization of proteins for Gram‐negative bacteria by support vector machines based on n‐peptide compositions
Gram‐negative bacteria have five major subcellular localization sites: the cytoplasm, the
periplasm, the inner membrane, the outer membrane, and the extracellular space. The …
periplasm, the inner membrane, the outer membrane, and the extracellular space. The …
Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms
KC Chou, HB Shen - Nature protocols, 2008 - nature.com
Abstract Information on subcellular localization of proteins is important to molecular cell
biology, proteomics, system biology and drug discovery. To provide the vast majority of …
biology, proteomics, system biology and drug discovery. To provide the vast majority of …
AlgPred: prediction of allergenic proteins and mapping of IgE epitopes
S Saha, GPS Raghava - Nucleic acids research, 2006 - academic.oup.com
In this study a systematic attempt has been made to integrate various approaches in order to
predict allergenic proteins with high accuracy. The dataset used for testing and training …
predict allergenic proteins with high accuracy. The dataset used for testing and training …
Learning with multiclass AUC: Theory and algorithms
The Area under the ROC curve (AUC) is a well-known ranking metric for problems such as
imbalanced learning and recommender systems. The vast majority of existing AUC …
imbalanced learning and recommender systems. The vast majority of existing AUC …
A multi-label classifier for predicting the subcellular localization of gram-negative bacterial proteins with both single and multiple sites
Prediction of protein subcellular localization is a challenging problem, particularly when the
system concerned contains both singleplex and multiplex proteins. In this paper, by …
system concerned contains both singleplex and multiplex proteins. In this paper, by …
[HTML][HTML] Cell-PLoc 2.0: an improved package of web-servers for predicting subcellular localization of proteins in various organisms
KC Chou, HB Shen - Natural Science, 2010 - scirp.org
Cell-PLoc 2.0 is a package of web-servers evolved from Cell-PLoc (Chou, KC & Shen, HB,
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …
Nature Protocols, 2008, 2: 153-162) by a top-down approach to improve the power for …