[PDF][PDF] An extensive survey of molecular docking tools and their applications using text mining and deep curation strategies.
K Rawal, T Khurana, H Sharma, S Verma, S Gupta… - PeerJ Preprints, 2019 - peerj.com
The technology of docking molecules in-silico has evolved significantly in recent years and
has become a crucial component of the drug discovery tool process that includes virtual …
has become a crucial component of the drug discovery tool process that includes virtual …
General prediction of peptide-MHC binding modes using incremental docking: a proof of concept
The class I major histocompatibility complex (MHC) is capable of binding peptides derived
from intracellular proteins and displaying them at the cell surface. The recognition of these …
from intracellular proteins and displaying them at the cell surface. The recognition of these …
Carbohydrate self‐assembly at surfaces: STM imaging of sucrose conformation and ordering on Cu (100)
Saccharides are ubiquitous biomolecules, but little is known about their interaction with, and
assembly at, surfaces. By combining preparative mass spectrometry with scanning tunneling …
assembly at, surfaces. By combining preparative mass spectrometry with scanning tunneling …
DeepTPpred: A deep learning approach with matrix factorization for predicting therapeutic peptides by integrating length information
The abuse of traditional antibiotics has led to increased resistance of bacteria and viruses.
Efficient therapeutic peptide prediction is critical for peptide drug discovery. However, most …
Efficient therapeutic peptide prediction is critical for peptide drug discovery. However, most …
Prediction and clarification of structures of (bio) molecules on surfaces
The design of future materials for biotechnological applications via deposition of molecules
on surfaces will require not only exquisite control of the deposition procedure, but of equal …
on surfaces will require not only exquisite control of the deposition procedure, but of equal …
IGLOO: An Iterative Global Exploration and Local Optimization Algorithm to Find Diverse Low-Energy Conformations of Flexible Molecules
W Margerit, A Charpentier, C Maugis-Rabusseau… - Algorithms, 2023 - mdpi.com
The exploration of the energy landscape of a chemical system is essential for understanding
and predicting its observable properties. In most cases, this is a challenging task due to the …
and predicting its observable properties. In most cases, this is a challenging task due to the …
Polymorphism in carbohydrate self-assembly at surfaces: STM imaging and theoretical modelling of trehalose on Cu (100)
Saccharides, also commonly known as carbohydrates, are ubiquitous biomolecules, but little
is known about their interaction with surfaces. Soft-landing electrospray ion beam deposition …
is known about their interaction with surfaces. Soft-landing electrospray ion beam deposition …
Exploring Molecular Energy Landscapes by Coupling the DFTB Potential with a Tree-Based Stochastic Algorithm: Investigation of the Conformational Diversity of …
Exploring the global energy landscape of relatively large molecules at the quantum level is a
challenging problem. In this work, we report the coupling of a nonredundant conformational …
challenging problem. In this work, we report the coupling of a nonredundant conformational …
Coarse-grained conformational sampling of protein structure improves the fit to experimental hydrogen-exchange data
Monitoring hydrogen/deuterium exchange (HDX) undergone by a protein in solution
produces experimental data that translates into valuable information about the protein's …
produces experimental data that translates into valuable information about the protein's …
Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach
M Jusot, D Stratmann, M Vaisset… - Journal of chemical …, 2018 - ACS Publications
Small cyclic peptides represent a promising class of therapeutic molecules with unique
chemical properties. However, the poor knowledge of their structural characteristics makes …
chemical properties. However, the poor knowledge of their structural characteristics makes …