[HTML][HTML] Patient-derived organoids model cervical tissue dynamics and viral oncogenesis in cervical cancer

K Lõhmussaar, R Oka, JE Valle-Inclan, MHH Smits… - Cell Stem Cell, 2021 - cell.com
Cervical cancer is a common gynecological malignancy often caused by high-risk human
papillomavirus. There is a paucity of human-derived culture systems to study the cervical …

Exploring the landscape of focal amplifications in cancer using AmpliconArchitect

V Deshpande, J Luebeck, NPD Nguyen… - Nature …, 2019 - nature.com
Focal oncogene amplification and rearrangements drive tumor growth and evolution in
multiple cancer types. We present AmpliconArchitect (AA), a tool to reconstruct the fine …

Causes and consequences of HPV integration in head and neck squamous cell carcinomas: state of the art

H Balaji, I Demers, N Wuerdemann, J Schrijnder… - Cancers, 2021 - mdpi.com
Simple Summary In human papillomavirus (HPV) associated head and neck squamous cell
carcinomas (HNSCC) s, the HPV genome is commonly found integrated in the human …

Extrachromosomal circular DNA: a new potential role in cancer progression

T Wang, H Zhang, Y Zhou, J Shi - Journal of translational medicine, 2021 - Springer
Extrachromosomal circular DNA (eccDNA) is considered a circular DNA molecule that exists
widely in nature and is independent of conventional chromosomes. eccDNA can be divided …

HPV integration generates a cellular super-enhancer which functions as ecDNA to regulate genome-wide transcription

R Tian, Z Huang, L Li, J Yuan, Q Zhang… - Nucleic Acids …, 2023 - academic.oup.com
Human papillomavirus (HPV) integration is a critical step in cervical cancer development;
however, the oncogenic mechanism at the genome-wide transcriptional level is still poorly …

Long-read sequencing reveals oncogenic mechanism of HPV-human fusion transcripts in cervical cancer

M Liu, Z Han, Y Zhi, Y Ruan, G Cao, G Wang, X Xu… - Translational …, 2023 - Elsevier
Integration of high-risk human papillomavirus (HPV) into the host genome is a crucial event
for the development of cervical cancer, however, the underlying mechanism of HPV …

VISDB: a manually curated database of viral integration sites in the human genome

D Tang, B Li, T Xu, R Hu, D Tan, X Song… - Nucleic acids …, 2020 - academic.oup.com
Virus integration into the human genome occurs frequently and represents a key driving
event in human disease. Many studies have reported viral integration sites (VISs) proximal …

Extrachromosomal DNA in HPV-mediated oropharyngeal cancer drives diverse oncogene transcription

J Pang, N Nguyen, J Luebeck, L Ball, A Finegersh… - Clinical Cancer …, 2021 - AACR
Purpose: Human papillomavirus (HPV) plays a major role in oncogenesis and circular
extrachromosomal DNA (ecDNA) is found in many cancers. However, the relationship …

Direct comparison of HPV16 viral genomic integration, copy loss, and structural variants in oropharyngeal and uterine cervical cancers reveal distinct relationships to …

TP Schrank, S Kim, H Rehmani, A Kothari, D Wu… - Cancers, 2022 - mdpi.com
Simple Summary HPV16 causes approximately 60% of uterine cervical cancer and 95% of
HPV-driven oropharynx cancers. Despite both being HPV-associated, these tumors are very …

Multi-omics mapping of human papillomavirus integration sites illuminates novel cervical cancer target genes

M Iden, SW Tsaih, YW Huang, P Liu, M Xiao… - British Journal of …, 2021 - nature.com
Background Integration of human papillomavirus (HPV) into the host genome is a dominant
feature of invasive cervical cancer (ICC), yet the tumorigenicity of cis genomic changes at …