Deep learning for bioimage analysis in developmental biology

A Hallou, HG Yevick, B Dumitrascu… - Development, 2021 - journals.biologists.com
Deep learning has transformed the way large and complex image datasets can be
processed, reshaping what is possible in bioimage analysis. As the complexity and size of …

From atomically resolved imaging to generative and causal models

SV Kalinin, A Ghosh, R Vasudevan, M Ziatdinov - Nature Physics, 2022 - nature.com
The development of high-resolution imaging methods such as electron and scanning probe
microscopy and atomic probe tomography have provided a wealth of information on the …

[HTML][HTML] Learning heterogeneous reaction kinetics from X-ray videos pixel by pixel

H Zhao, HD Deng, AE Cohen, J Lim, Y Li… - Nature, 2023 - nature.com
Reaction rates at spatially heterogeneous, unstable interfaces are notoriously difficult to
quantify, yet are essential in engineering many chemical systems, such as batteries and …

Correlative image learning of chemo-mechanics in phase-transforming solids

HD Deng, H Zhao, N Jin, L Hughes, BH Savitzky… - Nature Materials, 2022 - nature.com
Constitutive laws underlie most physical processes in nature. However, learning such
equations in heterogeneous solids (for example, due to phase separation) is challenging …

[HTML][HTML] Perspective: New directions in dynamical density functional theory

M Te Vrugt, R Wittkowski - Journal of Physics: Condensed Matter, 2022 - iopscience.iop.org
Classical dynamical density functional theory (DDFT) has become one of the central
modeling approaches in nonequilibrium soft matter physics. Recent years have seen the …

Physics-encoded deep learning in identifying battery parameters without direct knowledge of ground truth

B Wu, B Zhang, C Deng, W Lu - Applied Energy, 2022 - Elsevier
We show a method to embed physical laws and on-line observation into machine learning
so that irrelevant low-cost battery data can be utilized to identify complex system parameters …

Bayesian model calibration for block copolymer self-assembly: Likelihood-free inference and expected information gain computation via measure transport

R Baptista, L Cao, J Chen, O Ghattas, F Li… - Journal of …, 2024 - Elsevier
We consider the Bayesian calibration of models describing the phenomenon of block
copolymer (BCP) self-assembly, which is to infer model parameters and their uncertainty …

[HTML][HTML] Continuum-scale modelling of polymer blends using the Cahn–Hilliard equation: transport and thermodynamics

PK Inguva, PJ Walker, HW Yew, K Zhu, AJ Haslam… - Soft matter, 2021 - pubs.rsc.org
The Cahn–Hilliard equation is commonly used to study multi-component soft systems such
as polymer blends at continuum scales. We first systematically explore various features of …

A simple and practical finite difference method for the phase-field crystal model with a strong nonlinear vacancy potential on 3D surfaces

J Yang, J Wang, Z Tan - Computers & Mathematics with Applications, 2022 - Elsevier
The crystallization is a typical process in material science and this process can be described
by the phase-field crystal type models. To investigate the dynamics of phase-field crystal …

Bayesian parameterization of continuum battery models from featurized electrochemical measurements considering noise

Y Kuhn, H Wolf, A Latz, B Horstmann - Batteries & Supercaps, 2023 - Wiley Online Library
Physico‐chemical continuum battery models are typically parameterized by manual fits,
relying on the individual expertise of researchers. In this article, we introduce a computer …