Polyploidy before and after domestication of crop species
Recent advances in the genomics of polyploid species answer some of the long-standing
questions about the role of polyploidy in crop species. Here, we summarize the current …
questions about the role of polyploidy in crop species. Here, we summarize the current …
A roadmap for research in octoploid strawberry
VM Whitaker, SJ Knapp, MA Hardigan… - Horticulture …, 2020 - academic.oup.com
The cultivated strawberry (Fragaria× ananassa) is an allo-octoploid species, originating
nearly 300 years ago from wild progenitors from the Americas. Since that time the strawberry …
nearly 300 years ago from wild progenitors from the Americas. Since that time the strawberry …
Exploring deep learning for complex trait genomic prediction in polyploid outcrossing species
Genomic prediction (GP) is the procedure whereby the genetic merits of untested candidates
are predicted using genome wide marker information. Although numerous examples of GP …
are predicted using genome wide marker information. Although numerous examples of GP …
Genome‐wide association of volatiles reveals candidate loci for blueberry flavor
Plants produce a range of volatile organic compounds (VOCs), some of which are perceived
by the human olfactory system, contributing to a myriad flavors. Despite the importance of …
by the human olfactory system, contributing to a myriad flavors. Despite the importance of …
A genome-wide association study identified loci for yield component traits in sugarcane (Saccharum spp.)
FZ Barreto, JRBF Rosa, TWA Balsalobre, MM Pastina… - PLoS …, 2019 - journals.plos.org
Sugarcane (Saccharum spp.) has a complex genome with variable ploidy and frequent
aneuploidy, which hampers the understanding of phenotype and genotype relations …
aneuploidy, which hampers the understanding of phenotype and genotype relations …
polyRAD: Genotype calling with uncertainty from sequencing data in polyploids and diploids
Low or uneven read depth is a common limitation of genotyping-by-sequencing (GBS) and
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
restriction site-associated DNA sequencing (RAD-seq), resulting in high missing data rates …
Impact of whole-genome duplications on structural variant evolution in Cochlearia
T Hämälä, C Moore, L Cowan, M Carlile… - Nature …, 2024 - nature.com
Polyploidy, the result of whole-genome duplication (WGD), is a major driver of eukaryote
evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding …
evolution. Yet WGDs are hugely disruptive mutations, and we still lack a clear understanding …
In the name of the rose: a roadmap for rose research in the genome era
The recent completion of the rose genome sequence is not the end of a process, but rather a
starting point that opens up a whole set of new and exciting activities. Next to a high-quality …
starting point that opens up a whole set of new and exciting activities. Next to a high-quality …
Meiosis in polyploids and implications for genetic mapping: a review
Plant cytogenetic studies have provided essential knowledge on chromosome behavior
during meiosis, contributing to our understanding of this complex process. In this review, we …
during meiosis, contributing to our understanding of this complex process. In this review, we …
Model‐based genotype and ancestry estimation for potential hybrids with mixed‐ploidy
Non‐random mating among individuals can lead to spatial clustering of genetically similar
individuals and population stratification. This deviation from panmixia is commonly observed …
individuals and population stratification. This deviation from panmixia is commonly observed …