Phylogenetic tree building in the genomic age
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …
A practical guide to design and assess a phylogenomic study
J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
throughput sequencing now makes it possible to reconstruct evolutionary relationships …
OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species
L Xu, Z Dong, L Fang, Y Luo, Z Wei, H Guo… - Nucleic acids …, 2019 - academic.oup.com
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …
Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths
Butterflies and moths (Lepidoptera) are one of the major superradiations of insects,
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …
Evolutionary history of the Hymenoptera
Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …
insect orders, comprising more than 153,000 described and possibly up to one million …
Phylogenomics and the evolution of hemipteroid insects
KP Johnson, CH Dietrich, F Friedrich… - Proceedings of the …, 2018 - National Acad Sciences
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …
Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera
Acoustic communication is enabled by the evolution of specialised hearing and sound
producing organs. In this study, we performed a large-scale macroevolutionary study to …
producing organs. In this study, we performed a large-scale macroevolutionary study to …
Phylogenomics reveals the history of host use in mosquitoes
Mosquitoes have profoundly affected human history and continue to threaten human health
through the transmission of a diverse array of pathogens. The phylogeny of mosquitoes has …
through the transmission of a diverse array of pathogens. The phylogeny of mosquitoes has …
Phylogenomic analysis of Apoidea sheds new light on the sister group of bees
Background Apoid wasps and bees (Apoidea) are an ecologically and morphologically
diverse group of Hymenoptera, with some species of bees having evolved eusocial …
diverse group of Hymenoptera, with some species of bees having evolved eusocial …
Large-scale phylogenomic analyses reveal the monophyly of bryophytes and neoproterozoic origin of land plants
D Su, L Yang, X Shi, X Ma, X Zhou… - Molecular Biology …, 2021 - academic.oup.com
The relationships among the four major embryophyte lineages (mosses, liverworts,
hornworts, vascular plants) and the timing of the origin of land plants are enigmatic problems …
hornworts, vascular plants) and the timing of the origin of land plants are enigmatic problems …