Phylogenetic tree building in the genomic age

P Kapli, Z Yang, MJ Telford - Nature Reviews Genetics, 2020 - nature.com
Knowing phylogenetic relationships among species is fundamental for many studies in
biology. An accurate phylogenetic tree underpins our understanding of the major transitions …

A practical guide to design and assess a phylogenomic study

J Lozano-Fernandez - Genome Biology and Evolution, 2022 - academic.oup.com
Over the last decade, molecular systematics has undergone a change of paradigm as high-
throughput sequencing now makes it possible to reconstruct evolutionary relationships …

OrthoVenn2: a web server for whole-genome comparison and annotation of orthologous clusters across multiple species

L Xu, Z Dong, L Fang, Y Luo, Z Wei, H Guo… - Nucleic acids …, 2019 - academic.oup.com
OrthoVenn is a powerful web platform for the comparison and analysis of whole-genome
orthologous clusters. Here we present an updated version, OrthoVenn2, which provides new …

Phylogenomics reveals the evolutionary timing and pattern of butterflies and moths

AY Kawahara, D Plotkin, M Espeland… - Proceedings of the …, 2019 - National Acad Sciences
Butterflies and moths (Lepidoptera) are one of the major superradiations of insects,
comprising nearly 160,000 described extant species. As herbivores, pollinators, and prey …

Evolutionary history of the Hymenoptera

RS Peters, L Krogmann, C Mayer, A Donath, S Gunkel… - Current Biology, 2017 - cell.com
Summary Hymenoptera (sawflies, wasps, ants, and bees) are one of four mega-diverse
insect orders, comprising more than 153,000 described and possibly up to one million …

Phylogenomics and the evolution of hemipteroid insects

KP Johnson, CH Dietrich, F Friedrich… - Proceedings of the …, 2018 - National Acad Sciences
Hemipteroid insects (Paraneoptera), with over 10% of all known insect diversity, are a major
component of terrestrial and aquatic ecosystems. Previous phylogenetic analyses have not …

Phylogenomic analysis sheds light on the evolutionary pathways towards acoustic communication in Orthoptera

H Song, O Béthoux, S Shin, A Donath, H Letsch… - Nature …, 2020 - nature.com
Acoustic communication is enabled by the evolution of specialised hearing and sound
producing organs. In this study, we performed a large-scale macroevolutionary study to …

Phylogenomics reveals the history of host use in mosquitoes

J Soghigian, C Sither, SA Justi, G Morinaga… - Nature …, 2023 - nature.com
Mosquitoes have profoundly affected human history and continue to threaten human health
through the transmission of a diverse array of pathogens. The phylogeny of mosquitoes has …

Phylogenomic analysis of Apoidea sheds new light on the sister group of bees

M Sann, O Niehuis, RS Peters, C Mayer… - BMC evolutionary …, 2018 - Springer
Background Apoid wasps and bees (Apoidea) are an ecologically and morphologically
diverse group of Hymenoptera, with some species of bees having evolved eusocial …

Large-scale phylogenomic analyses reveal the monophyly of bryophytes and neoproterozoic origin of land plants

D Su, L Yang, X Shi, X Ma, X Zhou… - Molecular Biology …, 2021 - academic.oup.com
The relationships among the four major embryophyte lineages (mosses, liverworts,
hornworts, vascular plants) and the timing of the origin of land plants are enigmatic problems …