Stabilizing biocatalysts

AS Bommarius, MF Paye - Chemical Society Reviews, 2013 - pubs.rsc.org
The area of biocatalysis itself is in rapid development, fueled by both an enhanced
repertoire of protein engineering tools and an increasing list of solved problems …

Rational design of enzyme activity and enantioselectivity

Z Song, Q Zhang, W Wu, Z Pu, H Yu - Frontiers in Bioengineering and …, 2023 - frontiersin.org
The strategy of rational design to engineer enzymes is to predict the potential mutants based
on the understanding of the relationships between protein structure and function, and …

Stability effects of mutations and protein evolvability

N Tokuriki, DS Tawfik - Current opinion in structural biology, 2009 - Elsevier
The past several years have seen novel insights at the interface of protein biophysics and
evolution. The accepted paradigm that proteins can tolerate nearly any amino acid …

Role of distal sites in enzyme engineering

J Gu, Y Xu, Y Nie - Biotechnology Advances, 2023 - Elsevier
The limitations associated with natural enzyme catalysis have triggered the rise of the field of
protein engineering. Traditional rational design was based on the analysis of protein …

Engineering functional thermostable proteins using ancestral sequence reconstruction

RES Thomson, SE Carrera-Pacheco… - Journal of Biological …, 2022 - ASBMB
Natural proteins are often only slightly more stable in the native state than the denatured
state, and an increase in environmental temperature can easily shift the balance toward …

Engineering highly functional thermostable proteins using ancestral sequence reconstruction

Y Gumulya, JM Baek, SJ Wun, RES Thomson… - Nature Catalysis, 2018 - nature.com
Commercial biocatalysis requires robust enzymes that can withstand elevated temperatures
and long incubations. Ancestral reconstruction has shown that pre-Cambrian enzymes were …

Engineering proteins for thermostability through rigidifying flexible sites

H Yu, H Huang - Biotechnology advances, 2014 - Elsevier
Engineering proteins for thermostability is an exciting and challenging field since it is critical
for broadening the industrial use of recombinant proteins. Thermostability of proteins arises …

Exploring the past and the future of protein evolution with ancestral sequence reconstruction: the 'retro'approach to protein engineering

Y Gumulya, EMJ Gillam - Biochemical Journal, 2017 - portlandpress.com
A central goal in molecular evolution is to understand the ways in which genes and proteins
evolve in response to changing environments. In the absence of intact DNA from fossils …

SpyTag/SpyCatcher cyclization confers resilience to boiling on a mesophilic enzyme

C Schoene, JO Fierer, SP Bennett… - Angewandte Chemie …, 2014 - Wiley Online Library
SpyTag is a peptide that spontaneously forms an amide bond with its protein partner
SpyCatcher. SpyTag was fused at the N terminus of β‐lactamase and SpyCatcher at the C …

Intense neutral drifts yield robust and evolvable consensus proteins

S Bershtein, K Goldin, DS Tawfik - Journal of molecular biology, 2008 - Elsevier
What changes occur when a natural protein that had been under low mutation rates is
subjected to a neutral drift at high mutational loads, thus generating genetically diverse …