The power and promise of RNA‐seq in ecology and evolution

EV Todd, MA Black, NJ Gemmell - Molecular ecology, 2016 - Wiley Online Library
Reference is regularly made to the power of new genomic sequencing approaches. Using
powerful technology, however, is not the same as having the necessary power to address a …

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?

M Alvarez, AW Schrey, CL Richards - Molecular ecology, 2015 - Wiley Online Library
Molecular ecology has moved beyond the use of a relatively small number of markers, often
noncoding, and it is now possible to use whole‐genome measures of gene expression with …

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes

I Irisarri, P Singh, S Koblmüller… - Nature …, 2018 - nature.com
Lake Tanganyika is the oldest and phenotypically most diverse of the three East African
cichlid fish adaptive radiations. It is also the cradle for the younger parallel haplochromine …

How plasticity, genetic assimilation and cryptic genetic variation may contribute to adaptive radiations

RF Schneider, A Meyer - Molecular ecology, 2017 - Wiley Online Library
There is increasing evidence that phenotypic plasticity can promote population divergence
by facilitating phenotypic diversification and, eventually, genetic divergence. When a …

Ecology and evolution of the African Great Lakes and their faunas

W Salzburger, B Van Bocxlaer… - Annual Review of …, 2014 - annualreviews.org
The Great Lakes of East Africa are collectively the earth's most remarkable and species-rich
freshwater feature. Intrinsic biological factors and extrinsic ecological opportunities allowed …

De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species

M Carruthers, AA Yurchenko, JJ Augley, CE Adams… - BMC genomics, 2018 - Springer
Background Salmonid fishes exhibit high levels of phenotypic and ecological variation and
are thus ideal model systems for studying evolutionary processes of adaptive divergence …

Cichlid fishes as models of ecological diversification: patterns, mechanisms, and consequences

ED Burress - Hydrobiologia, 2015 - Springer
Cichlid fishes are hypothesized to encompass several independent adaptive radiations that
display increased diversification rates and impressive ecological heterogeneity. Here, I …

Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish

RF Schneider, Y Li, A Meyer, HM Gunter - Molecular ecology, 2014 - Wiley Online Library
Phenotypic plasticity is the ability of organisms with a given genotype to develop different
phenotypes according to environmental stimuli, resulting in individuals that are better …

Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes

P Franchini, C Fruciano, ML Spreitzer… - Molecular …, 2014 - Wiley Online Library
Determining the genetic bases of adaptations and their roles in speciation is a prominent
issue in evolutionary biology. Cichlid fish species flocks are a prime example of recent rapid …

[PDF][PDF] The role of alternative splicing and differential gene expression in cichlid adaptive radiation

P Singh, C Börger, H More… - Genome biology and …, 2017 - academic.oup.com
Species diverge eco-morphologically through the continuous action of natural selection on
functionally important structures, producing alternative adaptive morphologies. In cichlid …