Mass spectrometry‐based metabolomics

K Dettmer, PA Aronov… - Mass spectrometry …, 2007 - Wiley Online Library
This review presents an overview of the dynamically developing field of mass spectrometry‐
based metabolomics. Metabolomics aims at the comprehensive and quantitative analysis of …

Robustness of cellular functions

J Stelling, U Sauer, Z Szallasi, FJ Doyle, J Doyle - Cell, 2004 - cell.com
Robustness, the ability to maintain performance in the face of perturbations and uncertainty,
is a long-recognized key property of living systems. Owing to intimate links to cellular …

Light-driven CO2 sequestration in Escherichia coli to achieve theoretical yield of chemicals

G Hu, Z Li, D Ma, C Ye, L Zhang, C Gao, L Liu… - Nature Catalysis, 2021 - nature.com
CO2 sequestration engineering is an attractive strategy for achieving carbon-and energy-
efficient bioproduction. However, the efficiency of heterotrophic CO2 sequestration is limited …

Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli

BD Bennett, EH Kimball, M Gao, R Osterhout… - Nature chemical …, 2009 - nature.com
Absolute metabolite concentrations are critical to a quantitative understanding of cellular
metabolism, as concentrations impact both the free energies and rates of metabolic …

Pseudomonas putida KT2440 strain metabolizes glucose through a cycle formed by enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and pentose …

PI Nikel, M Chavarría, T Fuhrer, U Sauer… - Journal of Biological …, 2015 - ASBMB
The soil bacterium Pseudomonas putida KT2440 lacks a functional Embden-Meyerhof-
Parnas (EMP) pathway, and glycolysis is known to proceed almost exclusively through the …

Multidimensional optimality of microbial metabolism

R Schuetz, N Zamboni, M Zampieri, M Heinemann… - Science, 2012 - science.org
Although the network topology of metabolism is well known, understanding the principles
that govern the distribution of fluxes through metabolism lags behind. Experimentally, these …

13C-based metabolic flux analysis

N Zamboni, SM Fendt, M Rühl, U Sauer - Nature protocols, 2009 - nature.com
Stable isotope, and in particular 13C-based flux analysis, is the exclusive approach to
experimentally quantify the integrated responses of metabolic networks. Here we describe a …

The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli

U Sauer, F Canonaco, S Heri, A Perrenoud… - Journal of Biological …, 2004 - ASBMB
Pentose phosphate pathway and isocitrate dehydrogenase are generally considered to be
the major sources of the anabolic reductant NADPH. As one of very few microbes …

Metabolic networks in motion: 13C‐based flux analysis

U Sauer - Molecular systems biology, 2006 - embopress.org
Many properties of complex networks cannot be understood from monitoring the
components—not even when comprehensively monitoring all protein or metabolite …

[HTML][HTML] GC–MS libraries for the rapid identification of metabolites in complex biological samples

N Schauer, D Steinhauser, S Strelkov, D Schomburg… - FEBS letters, 2005 - Elsevier
Gas chromatography–mass spectrometry based metabolite profiling of biological samples is
rapidly becoming one of the cornerstones of functional genomics and systems biology. Thus …