Mass spectrometry‐based metabolomics
This review presents an overview of the dynamically developing field of mass spectrometry‐
based metabolomics. Metabolomics aims at the comprehensive and quantitative analysis of …
based metabolomics. Metabolomics aims at the comprehensive and quantitative analysis of …
Robustness of cellular functions
Robustness, the ability to maintain performance in the face of perturbations and uncertainty,
is a long-recognized key property of living systems. Owing to intimate links to cellular …
is a long-recognized key property of living systems. Owing to intimate links to cellular …
Light-driven CO2 sequestration in Escherichia coli to achieve theoretical yield of chemicals
CO2 sequestration engineering is an attractive strategy for achieving carbon-and energy-
efficient bioproduction. However, the efficiency of heterotrophic CO2 sequestration is limited …
efficient bioproduction. However, the efficiency of heterotrophic CO2 sequestration is limited …
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
BD Bennett, EH Kimball, M Gao, R Osterhout… - Nature chemical …, 2009 - nature.com
Absolute metabolite concentrations are critical to a quantitative understanding of cellular
metabolism, as concentrations impact both the free energies and rates of metabolic …
metabolism, as concentrations impact both the free energies and rates of metabolic …
Pseudomonas putida KT2440 strain metabolizes glucose through a cycle formed by enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and pentose …
The soil bacterium Pseudomonas putida KT2440 lacks a functional Embden-Meyerhof-
Parnas (EMP) pathway, and glycolysis is known to proceed almost exclusively through the …
Parnas (EMP) pathway, and glycolysis is known to proceed almost exclusively through the …
Multidimensional optimality of microbial metabolism
Although the network topology of metabolism is well known, understanding the principles
that govern the distribution of fluxes through metabolism lags behind. Experimentally, these …
that govern the distribution of fluxes through metabolism lags behind. Experimentally, these …
13C-based metabolic flux analysis
Stable isotope, and in particular 13C-based flux analysis, is the exclusive approach to
experimentally quantify the integrated responses of metabolic networks. Here we describe a …
experimentally quantify the integrated responses of metabolic networks. Here we describe a …
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
U Sauer, F Canonaco, S Heri, A Perrenoud… - Journal of Biological …, 2004 - ASBMB
Pentose phosphate pathway and isocitrate dehydrogenase are generally considered to be
the major sources of the anabolic reductant NADPH. As one of very few microbes …
the major sources of the anabolic reductant NADPH. As one of very few microbes …
Metabolic networks in motion: 13C‐based flux analysis
U Sauer - Molecular systems biology, 2006 - embopress.org
Many properties of complex networks cannot be understood from monitoring the
components—not even when comprehensively monitoring all protein or metabolite …
components—not even when comprehensively monitoring all protein or metabolite …
[HTML][HTML] GC–MS libraries for the rapid identification of metabolites in complex biological samples
N Schauer, D Steinhauser, S Strelkov, D Schomburg… - FEBS letters, 2005 - Elsevier
Gas chromatography–mass spectrometry based metabolite profiling of biological samples is
rapidly becoming one of the cornerstones of functional genomics and systems biology. Thus …
rapidly becoming one of the cornerstones of functional genomics and systems biology. Thus …