Transcription factors: from enhancer binding to developmental control
F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …
expression, which give rise to stereotypically patterned embryos even in the presence of …
A high-resolution atlas of nucleosome occupancy in yeast
We present the first complete high-resolution map of nucleosome occupancy across the
whole Saccharomyces cerevisiae genome, identifying over 70,000 positioned nucleosomes …
whole Saccharomyces cerevisiae genome, identifying over 70,000 positioned nucleosomes …
Nucleosome stability distinguishes two different promoter types at all protein-coding genes in yeast
Previous studies indicate that eukaryotic promoters display a stereotypical chromatin
landscape characterized by a well-positioned+ 1 nucleosome near the transcription start site …
landscape characterized by a well-positioned+ 1 nucleosome near the transcription start site …
[HTML][HTML] Nucleosome positioning: how is it established, and why does it matter?
M Radman-Livaja, OJ Rando - Developmental biology, 2010 - Elsevier
Packaging of eukaryotic genomes into chromatin affects every process that occurs on DNA.
The positioning of nucleosomes on underlying DNA plays a key role in the regulation of …
The positioning of nucleosomes on underlying DNA plays a key role in the regulation of …
Sequence-directed action of RSC remodeler and general regulatory factors modulates+ 1 nucleosome position to facilitate transcription
S Kubik, E O'Duibhir, WJ de Jonge, S Mattarocci… - Molecular cell, 2018 - cell.com
Accessible chromatin is important for RNA polymerase II recruitment and transcription
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …
Systematic study of nucleosome-displacing factors in budding yeast
Nucleosomes present a barrier for the binding of most transcription factors (TFs). However,
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …
Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae
Background Growth rate is central to the development of cells in all organisms. However,
little is known about the impact of changing growth rates. We used continuous cultures to …
little is known about the impact of changing growth rates. We used continuous cultures to …
At the beginning of the end and in the middle of the beginning: structure and maintenance of telomeric DNA repeats and interstitial telomeric sequences
AY Aksenova, SM Mirkin - Genes, 2019 - mdpi.com
Tandem DNA repeats derived from the ancestral (TTAGGG) n run were first detected at
chromosome ends of the majority of living organisms, hence the name telomeric DNA …
chromosome ends of the majority of living organisms, hence the name telomeric DNA …
Nucleosome positioning in Saccharomyces cerevisiae
A Jansen, KJ Verstrepen - Microbiology and molecular biology …, 2011 - Am Soc Microbiol
The DNA of eukaryotic cells is spooled around large histone protein complexes, forming
nucleosomes that make up the basis for a high-order packaging structure called chromatin …
nucleosomes that make up the basis for a high-order packaging structure called chromatin …