Transcription factors: from enhancer binding to developmental control

F Spitz, EEM Furlong - Nature reviews genetics, 2012 - nature.com
Developmental progression is driven by specific spatiotemporal domains of gene
expression, which give rise to stereotypically patterned embryos even in the presence of …

Chromatin and transcription in yeast

OJ Rando, F Winston - Genetics, 2012 - academic.oup.com
Understanding the mechanisms by which chromatin structure controls eukaryotic
transcription has been an intense area of investigation for the past 25 years. Many of the key …

A high-resolution atlas of nucleosome occupancy in yeast

W Lee, D Tillo, N Bray, RH Morse, RW Davis… - Nature …, 2007 - nature.com
We present the first complete high-resolution map of nucleosome occupancy across the
whole Saccharomyces cerevisiae genome, identifying over 70,000 positioned nucleosomes …

Nucleosome stability distinguishes two different promoter types at all protein-coding genes in yeast

S Kubik, MJ Bruzzone, P Jacquet, JL Falcone… - Molecular cell, 2015 - cell.com
Previous studies indicate that eukaryotic promoters display a stereotypical chromatin
landscape characterized by a well-positioned+ 1 nucleosome near the transcription start site …

[HTML][HTML] Nucleosome positioning: how is it established, and why does it matter?

M Radman-Livaja, OJ Rando - Developmental biology, 2010 - Elsevier
Packaging of eukaryotic genomes into chromatin affects every process that occurs on DNA.
The positioning of nucleosomes on underlying DNA plays a key role in the regulation of …

Sequence-directed action of RSC remodeler and general regulatory factors modulates+ 1 nucleosome position to facilitate transcription

S Kubik, E O'Duibhir, WJ de Jonge, S Mattarocci… - Molecular cell, 2018 - cell.com
Accessible chromatin is important for RNA polymerase II recruitment and transcription
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …

Systematic study of nucleosome-displacing factors in budding yeast

C Yan, H Chen, L Bai - Molecular cell, 2018 - cell.com
Nucleosomes present a barrier for the binding of most transcription factors (TFs). However,
special TFs known as nucleosome-displacing factors (NDFs) can access embedded sites …

Growth-rate regulated genes have profound impact on interpretation of transcriptome profiling in Saccharomyces cerevisiae

B Regenberg, T Grotkjær, O Winther, A Fausbøll… - Genome biology, 2006 - Springer
Background Growth rate is central to the development of cells in all organisms. However,
little is known about the impact of changing growth rates. We used continuous cultures to …

At the beginning of the end and in the middle of the beginning: structure and maintenance of telomeric DNA repeats and interstitial telomeric sequences

AY Aksenova, SM Mirkin - Genes, 2019 - mdpi.com
Tandem DNA repeats derived from the ancestral (TTAGGG) n run were first detected at
chromosome ends of the majority of living organisms, hence the name telomeric DNA …

Nucleosome positioning in Saccharomyces cerevisiae

A Jansen, KJ Verstrepen - Microbiology and molecular biology …, 2011 - Am Soc Microbiol
The DNA of eukaryotic cells is spooled around large histone protein complexes, forming
nucleosomes that make up the basis for a high-order packaging structure called chromatin …