Dam assisted fluorescent tagging of chromatin accessibility (dafca) for optical genome mapping in nanochannel arrays
G Nifker, A Grunwald, S Margalit, Z Tulpova… - ACS …, 2023 - ACS Publications
Proteins and enzymes in the cell nucleus require physical access to their DNA target sites in
order to perform genomic tasks such as gene activation and transcription. Hence, chromatin …
order to perform genomic tasks such as gene activation and transcription. Hence, chromatin …
DeepOM: single-molecule optical genome mapping via deep learning
Y Nogin, T Detinis Zur, S Margalit, I Barzilai… - …, 2023 - academic.oup.com
Motivation Efficient tapping into genomic information from a single microscopic image of an
intact DNA molecule is an outstanding challenge and its solution will open new frontiers in …
intact DNA molecule is an outstanding challenge and its solution will open new frontiers in …
Long-read structural and epigenetic profiling of a kidney tumor-matched sample with nanopore sequencing and optical genome mapping
S Margalit, Z Tulpová, T Detinis Zur… - NAR Genomics and …, 2025 - academic.oup.com
Carcinogenesis often involves significant alterations in the cancer genome, marked by large
structural variants (SVs) and copy number variations (CNVs) that are difficult to capture with …
structural variants (SVs) and copy number variations (CNVs) that are difficult to capture with …
OM2Seq: Learning retrieval embeddings for optical genome mapping
Y Nogin, D Sapir, TD Zur, N Weinberger… - Bioinformatics …, 2024 - academic.oup.com
Motivation Genomics-based diagnostic methods that are quick, precise, and economical are
essential for the advancement of precision medicine, with applications spanning the …
essential for the advancement of precision medicine, with applications spanning the …