Geometric deep learning of RNA structure
RNA molecules adopt three-dimensional structures that are critical to their function and of
interest in drug discovery. Few RNA structures are known, however, and predicting them …
interest in drug discovery. Few RNA structures are known, however, and predicting them …
The HDOCK server for integrated protein–protein docking
Abstract The HDOCK server (http://hdock. phys. hust. edu. cn/) is a highly integrated suite of
homology search, template-based modeling, structure prediction, macromolecular docking …
homology search, template-based modeling, structure prediction, macromolecular docking …
Advances in RNA 3D structure prediction
X Ou, Y Zhang, Y Xiong, Y Xiao - Journal of Chemical Information …, 2022 - ACS Publications
RNA molecules carry out various cellular functions, and understanding the mechanisms
behind their functions requires the knowledge of their 3D structures. Different types of …
behind their functions requires the knowledge of their 3D structures. Different types of …
RNA 3D structure prediction using coarse-grained models
The three-dimensional (3D) structures of Ribonucleic acid (RNA) molecules are essential to
understanding their various and important biological functions. However, experimental …
understanding their various and important biological functions. However, experimental …
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
RNA-Puzzles is a collective experiment in blind 3D RNA structure prediction. We report here
a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
a third round of RNA-Puzzles. Five puzzles, 4, 8, 12, 13, 14, all structures of riboswitch …
3dRNA v2. 0: an updated web server for RNA 3D structure prediction
3D structures of RNAs are the basis for understanding their biological functions. However,
experimentally solved RNA 3D structures are very limited in comparison with known RNA …
experimentally solved RNA 3D structures are very limited in comparison with known RNA …
3dRNA: 3D structure prediction from linear to circular RNAs
Y Zhang, J Wang, Y Xiao - Journal of Molecular Biology, 2022 - Elsevier
Abstract 3D structures of RNAs are the basis for understanding their biological functions.
However, experimentally solved RNA 3D structures are very limited. Therefore, many …
However, experimentally solved RNA 3D structures are very limited. Therefore, many …
Optimization of RNA 3D structure prediction using evolutionary restraints of nucleotide–nucleotide interactions from direct coupling analysis
Direct coupling analysis of nucleotide coevolution provides a novel approach to identify
which nucleotides in an RNA molecule are likely in direct contact, and this information …
which nucleotides in an RNA molecule are likely in direct contact, and this information …
RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling
RNA 3D structures are critical for understanding their functions. However, only a limited
number of RNA structures have been experimentally solved, so computational prediction …
number of RNA structures have been experimentally solved, so computational prediction …
Hypoxia-induced exosomal circPDK1 promotes pancreatic cancer glycolysis via c-myc activation by modulating miR-628-3p/BPTF axis and degrading BIN1
J Lin, X Wang, S Zhai, M Shi, C Peng, X Deng… - Journal of Hematology & …, 2022 - Springer
Background circRNA has been established to play a pivotal role in tumorigenesis
development in a variety of cancers; nevertheless, the biological functions and molecular …
development in a variety of cancers; nevertheless, the biological functions and molecular …