De novo protein design, a retrospective
IV Korendovych, WF DeGrado - Quarterly reviews of biophysics, 2020 - cambridge.org
Proteins are molecular machines whose function depends on their ability to achieve
complex folds with precisely defined structural and dynamic properties. The rational design …
complex folds with precisely defined structural and dynamic properties. The rational design …
Mixed quantum mechanical/molecular mechanical molecular dynamics simulations of biological systems in ground and electronically excited states
E Brunk, U Rothlisberger - Chemical reviews, 2015 - ACS Publications
The quantum nature of electrons and nuclei is manifested in countless biological events
including the rearrangements of electrons in biochemical reactions, electron and proton …
including the rearrangements of electrons in biochemical reactions, electron and proton …
Designing a 20-residue protein
JW Neidigh, RM Fesinmeyer, NH Andersen - Nature structural biology, 2002 - nature.com
Truncation and mutation of a poorly folded 39-residue peptide has produced 20-residue
constructs that are> 95% folded in water at physiological pH. These constructs optimize a …
constructs that are> 95% folded in water at physiological pH. These constructs optimize a …
The World of β‐ and γ‐Peptides Comprised of Homologated Proteinogenic Amino Acids and Other Components
D Seebach, AK Beck, DJ Bierbaum - Chemistry & biodiversity, 2004 - Wiley Online Library
The origins of our nearly ten‐year research program of chemical and biological
investigations into peptides based on homologated proteinogenic amino acids are …
investigations into peptides based on homologated proteinogenic amino acids are …
Design of folded peptides
J Venkatraman, SC Shankaramma… - Chemical reviews, 2001 - ACS Publications
The construction of complex protein folds relies on the precise conversion of a linear
polypeptide chain into a compact 3-dimensional structure. The interplay of forces that link …
polypeptide chain into a compact 3-dimensional structure. The interplay of forces that link …
Heme protein assemblies
CJ Reedy, BR Gibney - Chemical reviews, 2004 - ACS Publications
Hemes remain one of the most visible and versatile classes of cofactors utilized in biology. 1
Since their discovery, the structural and functional aspects of heme proteins have fascinated …
Since their discovery, the structural and functional aspects of heme proteins have fascinated …
De novo design and structural characterization of proteins and metalloproteins
▪ Abstract De novo protein design has recently emerged as an attractive approach for
studying the structure and function of proteins. This approach critically tests our …
studying the structure and function of proteins. This approach critically tests our …
Implications of aromatic–aromatic interactions: From protein structures to peptide models
KM Makwana, R Mahalakshmi - Protein Science, 2015 - Wiley Online Library
With increasing structural information on proteins, the opportunity to understand physical
forces governing protein folding is also expanding. One of the significant non‐covalent …
forces governing protein folding is also expanding. One of the significant non‐covalent …
De Novo Design of Helical Bundles as Models for Understanding Protein Folding and Function
De novo protein design has proven to be a powerful tool for understanding protein folding,
structure, and function. In this Account, we highlight aspects of our research on the design of …
structure, and function. In this Account, we highlight aspects of our research on the design of …
[PDF][PDF] The structure of docking domains in modular polyketide synthases
RW Broadhurst, D Nietlispach, MP Wheatcroft… - Chemistry & biology, 2003 - cell.com
Polyketides from actinomycete bacteria provide the basis for many valuable medicines, so
engineering genes for their biosynthesis to produce variant molecules holds promise for …
engineering genes for their biosynthesis to produce variant molecules holds promise for …