Metabolic control of nitrogen fixation in rhizobium-legume symbioses
Rhizobia induce nodule formation on legume roots and differentiate into bacteroids, which
catabolize plant-derived dicarboxylates to reduce atmospheric N2 into ammonia. Despite …
catabolize plant-derived dicarboxylates to reduce atmospheric N2 into ammonia. Despite …
Computational strategies for a system-level understanding of metabolism
Cell metabolism is the biochemical machinery that provides energy and building blocks to
sustain life. Understanding its fine regulation is of pivotal relevance in several fields, from …
sustain life. Understanding its fine regulation is of pivotal relevance in several fields, from …
Flux sampling is a powerful tool to study metabolism under changing environmental conditions
HA Herrmann, BC Dyson, L Vass… - NPJ systems biology …, 2019 - nature.com
The development of high-throughput 'omic techniques has sparked a rising interest in
genome-scale metabolic models, with applications ranging from disease diagnostics to crop …
genome-scale metabolic models, with applications ranging from disease diagnostics to crop …
Integration of single-cell RNA-seq data into population models to characterize cancer metabolism
Metabolic reprogramming is a general feature of cancer cells. Regrettably, the
comprehensive quantification of metabolites in biological specimens does not promptly …
comprehensive quantification of metabolites in biological specimens does not promptly …
A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell …
Cancer cells share several metabolic traits, including aerobic production of lactate from
glucose (Warburg effect), extensive glutamine utilization and impaired mitochondrial …
glucose (Warburg effect), extensive glutamine utilization and impaired mitochondrial …
INTEGRATE: Model-based multi-omics data integration to characterize multi-level metabolic regulation
Metabolism is directly and indirectly fine-tuned by a complex web of interacting regulatory
mechanisms that fall into two major classes. On the one hand, the expression level of the …
mechanisms that fall into two major classes. On the one hand, the expression level of the …
Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models
The metabolic rearrangements occurring in cancer cells can be effectively investigated with
a Systems Biology approach supported by metabolic network modeling. We here present …
a Systems Biology approach supported by metabolic network modeling. We here present …
popFBA: tackling intratumour heterogeneity with Flux Balance Analysis
Motivation Intratumour heterogeneity poses many challenges to the treatment of cancer.
Unfortunately, the transcriptional and metabolic information retrieved by currently available …
Unfortunately, the transcriptional and metabolic information retrieved by currently available …
Linking alterations in metabolic fluxes with shifts in metabolite levels by means of kinetic modeling
The links between metabolic dysfunctions and various diseases or pathological conditions
are being increasingly revealed. This revival of interest in cellular metabolism has pushed …
are being increasingly revealed. This revival of interest in cellular metabolism has pushed …
‐Omics and Clinical Data Integration
Many high‐throughput post‐genomics (‐omics) technologies have been developed to
unravel cellular complexity and to investigate biological systems. Each‐omics technology …
unravel cellular complexity and to investigate biological systems. Each‐omics technology …