Next-generation sequencing for confronting virus pandemics
Virus pandemics have happened, are happening and will happen again. In recent decades,
the rate of zoonotic viral spillover into humans has accelerated, mirroring the expansion of …
the rate of zoonotic viral spillover into humans has accelerated, mirroring the expansion of …
Functional role of miR‑155 in physiological and pathological processes of liver injury
X Feng, J Bao, C Song, L Xie… - Molecular …, 2021 - spandidos-publications.com
There are several types of liver injury, including alcohol‑induced liver injury, drug‑induced
liver injury, infectious liver injury, cirrhosis, liver ischemia/reperfusion injury and liver failure …
liver injury, infectious liver injury, cirrhosis, liver ischemia/reperfusion injury and liver failure …
SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations
B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …
Atypical mutational spectrum of SARS-CoV-2 replicating in the presence of ribavirin
P Somovilla, C García-Crespo… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
We report that ribavirin exerts an inhibitory and mutagenic activity on SARS-CoV-2-infecting
Vero cells, with a therapeutic index higher than 10. Deep sequencing analysis of the mutant …
Vero cells, with a therapeutic index higher than 10. Deep sequencing analysis of the mutant …
Fitness-dependent, mild mutagenic activity of Sofosbuvir for hepatitis C virus
B Martínez-González, I Gallego, J Gregori… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
The concept of a mild mutagen was coined to describe a minor mutagenic activity exhibited
by some nucleoside analogues that potentiated their efficacy as antiretroviral agents. In the …
by some nucleoside analogues that potentiated their efficacy as antiretroviral agents. In the …
Pipeline for specific subtype amplification and drug resistance detection in hepatitis C virus
ME Soria, J Gregori, Q Chen, D García-Cehic… - BMC Infectious …, 2018 - Springer
Background Despite the high sustained virological response rates achieved with current
directly-acting antiviral agents (DAAs) against hepatitis C virus (HCV), around 5–10% of …
directly-acting antiviral agents (DAAs) against hepatitis C virus (HCV), around 5–10% of …
Genetic characterization of norovirus GII. 4 variants circulating in Canada using a metagenomic technique
N Petronella, J Ronholm, M Suresh, J Harlow… - BMC Infectious …, 2018 - Springer
Background Human norovirus is the leading cause of viral gastroenteritis globally, and the
GII. 4 has been the most predominant genotype for decades. This genotype has numerous …
GII. 4 has been the most predominant genotype for decades. This genotype has numerous …
Machine-learning based patient classification using Hepatitis B virus full-length genome quasispecies from Asian and European cohorts
AJ Mueller-Breckenridge, F Garcia-Alcalde… - Scientific Reports, 2019 - nature.com
Chronic infection with Hepatitis B virus (HBV) is a major risk factor for the development of
advanced liver disease including fibrosis, cirrhosis, and hepatocellular carcinoma (HCC) …
advanced liver disease including fibrosis, cirrhosis, and hepatocellular carcinoma (HCC) …
[HTML][HTML] Resistance of high fitness hepatitis C virus to lethal mutagenesis
I Gallego, J Gregori, ME Soria, C Garcia-Crespo… - Virology, 2018 - Elsevier
Viral fitness quantifies the degree of virus adaptation to a given environment. How viral
fitness can influence the mutant spectrum complexity of a viral quasispecies subjected to …
fitness can influence the mutant spectrum complexity of a viral quasispecies subjected to …
Inspecting the ribozyme region of hepatitis delta virus genotype 1: conservation and variability
The hepatitis delta virus (HDV) genome has an autocatalytic region called the ribozyme,
which is essential for viral replication. The aim of this study was to use next-generation …
which is essential for viral replication. The aim of this study was to use next-generation …