Next-generation sequencing for confronting virus pandemics

J Quer, S Colomer-Castell, C Campos, C Andrés… - Viruses, 2022 - mdpi.com
Virus pandemics have happened, are happening and will happen again. In recent decades,
the rate of zoonotic viral spillover into humans has accelerated, mirroring the expansion of …

Functional role of miR‑155 in physiological and pathological processes of liver injury

X Feng, J Bao, C Song, L Xie… - Molecular …, 2021 - spandidos-publications.com
There are several types of liver injury, including alcohol‑induced liver injury, drug‑induced
liver injury, infectious liver injury, cirrhosis, liver ischemia/reperfusion injury and liver failure …

SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations

B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …

Atypical mutational spectrum of SARS-CoV-2 replicating in the presence of ribavirin

P Somovilla, C García-Crespo… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
We report that ribavirin exerts an inhibitory and mutagenic activity on SARS-CoV-2-infecting
Vero cells, with a therapeutic index higher than 10. Deep sequencing analysis of the mutant …

Fitness-dependent, mild mutagenic activity of Sofosbuvir for hepatitis C virus

B Martínez-González, I Gallego, J Gregori… - Antimicrobial Agents …, 2023 - Am Soc Microbiol
The concept of a mild mutagen was coined to describe a minor mutagenic activity exhibited
by some nucleoside analogues that potentiated their efficacy as antiretroviral agents. In the …

Pipeline for specific subtype amplification and drug resistance detection in hepatitis C virus

ME Soria, J Gregori, Q Chen, D García-Cehic… - BMC Infectious …, 2018 - Springer
Background Despite the high sustained virological response rates achieved with current
directly-acting antiviral agents (DAAs) against hepatitis C virus (HCV), around 5–10% of …

Genetic characterization of norovirus GII. 4 variants circulating in Canada using a metagenomic technique

N Petronella, J Ronholm, M Suresh, J Harlow… - BMC Infectious …, 2018 - Springer
Background Human norovirus is the leading cause of viral gastroenteritis globally, and the
GII. 4 has been the most predominant genotype for decades. This genotype has numerous …

Machine-learning based patient classification using Hepatitis B virus full-length genome quasispecies from Asian and European cohorts

AJ Mueller-Breckenridge, F Garcia-Alcalde… - Scientific Reports, 2019 - nature.com
Chronic infection with Hepatitis B virus (HBV) is a major risk factor for the development of
advanced liver disease including fibrosis, cirrhosis, and hepatocellular carcinoma (HCC) …

[HTML][HTML] Resistance of high fitness hepatitis C virus to lethal mutagenesis

I Gallego, J Gregori, ME Soria, C Garcia-Crespo… - Virology, 2018 - Elsevier
Viral fitness quantifies the degree of virus adaptation to a given environment. How viral
fitness can influence the mutant spectrum complexity of a viral quasispecies subjected to …

Inspecting the ribozyme region of hepatitis delta virus genotype 1: conservation and variability

B Pacin-Ruiz, MF Cortese, D Tabernero, S Sopena… - Viruses, 2022 - mdpi.com
The hepatitis delta virus (HDV) genome has an autocatalytic region called the ribozyme,
which is essential for viral replication. The aim of this study was to use next-generation …