An epigenetic role of mitochondria in cancer
Mitochondria are not only the main energy supplier but are also the cell metabolic center
regulating multiple key metaborates that play pivotal roles in epigenetics regulation. These …
regulating multiple key metaborates that play pivotal roles in epigenetics regulation. These …
[HTML][HTML] Choosing the right tool for the job: RNAi, TALEN, or CRISPR
M Boettcher, MT McManus - Molecular cell, 2015 - cell.com
The most widely used approach for defining gene function is to reduce or completely disrupt
its normal expression. For over a decade, RNAi has ruled the lab, offering a magic bullet to …
its normal expression. For over a decade, RNAi has ruled the lab, offering a magic bullet to …
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
Motivation Deciphering the language of non-coding DNA is one of the fundamental
problems in genome research. Gene regulatory code is highly complex due to the existence …
problems in genome research. Gene regulatory code is highly complex due to the existence …
Cancer transcriptome profiling at the juncture of clinical translation
M Cieślik, AM Chinnaiyan - Nature Reviews Genetics, 2018 - nature.com
Methodological breakthroughs over the past four decades have repeatedly revolutionized
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
transcriptome profiling. Using RNA sequencing (RNA-seq), it has now become possible to …
Promoter DNA hypermethylation and paradoxical gene activation
DNA methylation is a stable epigenetic modification that contributes to the spatiotemporal
regulation of gene expression. The manner in which DNA methylation contributes to …
regulation of gene expression. The manner in which DNA methylation contributes to …
Regulation of eukaryotic gene expression by the untranslated gene regions and other non-coding elements
There is now compelling evidence that the complexity of higher organisms correlates with
the relative amount of non-coding RNA rather than the number of protein-coding genes …
the relative amount of non-coding RNA rather than the number of protein-coding genes …
The landscape of isoform switches in human cancers
K Vitting-Seerup, A Sandelin - Molecular Cancer Research, 2017 - AACR
Alternative usage of transcript isoforms from the same gene has been hypothesized as an
important feature in cancers. However, differential usage of gene transcripts between …
important feature in cancers. However, differential usage of gene transcripts between …
RNA processing and its regulation: global insights into biological networks
DD Licatalosi, RB Darnell - Nature Reviews Genetics, 2010 - nature.com
In recent years views of eukaryotic gene expression have been transformed by the finding
that enormous diversity can be generated at the RNA level. Advances in technologies for …
that enormous diversity can be generated at the RNA level. Advances in technologies for …
Distal alternative last exons localize mRNAs to neural projections
Spatial restriction of mRNA to distinct subcellular locations enables local regulation and
synthesis of proteins. However, the organizing principles of mRNA localization remain …
synthesis of proteins. However, the organizing principles of mRNA localization remain …
Direct detection of alternative open reading frames translation products in human significantly expands the proteome
B Vanderperre, JF Lucier, C Bissonnette, J Motard… - PloS one, 2013 - journals.plos.org
A fully mature mRNA is usually associated to a reference open reading frame encoding a
single protein. Yet, mature mRNAs contain unconventional alternative open reading frames …
single protein. Yet, mature mRNAs contain unconventional alternative open reading frames …