Network representation and analysis of energy coupling mechanisms in cellular metabolism by a graph-theoretical approach
S Nath - Theory in Biosciences, 2022 - Springer
Mechanisms coupling the chemical reactions of oxidation and ATP synthesis in cellular
metabolism by the fundamental biological process of oxidative phosphorylation (OX PHOS) …
metabolism by the fundamental biological process of oxidative phosphorylation (OX PHOS) …
Inference of chromosome selection parameters and missegregation rate in cancer from DNA-sequencing data
Z Xiang, Z Liu, KN Dinh - Scientific Reports, 2024 - nature.com
Aneuploidy is frequently observed in cancers and has been linked to poor patient outcome.
Analysis of aneuploidy in DNA-sequencing (DNA-seq) data necessitates untangling the …
Analysis of aneuploidy in DNA-sequencing (DNA-seq) data necessitates untangling the …
A mathematical connection between single-elimination sports tournaments and evolutionary trees
MC King, NA Rosenberg - Mathematics Magazine, 2023 - Taylor & Francis
How many ways are there to arrange the sequence of games in a single-elimination sports
tournament? We consider the connection between this enumeration problem and the …
tournament? We consider the connection between this enumeration problem and the …
Limit theorems for patterns in ranked tree‐child networks
M Fuchs, H Liu, TC Yu - Random Structures & Algorithms, 2024 - Wiley Online Library
We prove limit laws for the number of occurrences of a pattern on the fringe of a ranked tree‐
child network which is picked uniformly at random. Our results extend the limit law for …
child network which is picked uniformly at random. Our results extend the limit law for …
[HTML][HTML] Distributions of 4-subtree patterns for uniform random unrooted phylogenetic trees
Tree shape statistics based on peripheral structures have been utilized to study evolutionary
mechanisms and inference methods. Partially motivated by a recent study by Pouryahya and …
mechanisms and inference methods. Partially motivated by a recent study by Pouryahya and …
[HTML][HTML] Distributions of cherries and pitchforks for the Ford model
Distributional properties of tree shape statistics under random phylogenetic tree models play
an important role in investigating the evolutionary forces underlying the observed …
an important role in investigating the evolutionary forces underlying the observed …
[PDF][PDF] Diffusion of binary opinions in a growing population with heterogeneous behaviour and external influence.
S Moharir, AS Omanwar… - … & Heterogeneous Media, 2023 - aimspress.com
We consider a growing population of individuals with binary opinions, namely, 0 or 1, that
evolve in discrete time. The underlying interaction network is complete. At every time step, a …
evolve in discrete time. The underlying interaction network is complete. At every time step, a …
Subtree moments in random phylogenetic trees
A Thompson - 2023 - ueaeprints.uea.ac.uk
Null models for randomly generating trees are useful for detecting and understanding
evolutionary processes in real phylogenetic trees. The two most commonly used null models …
evolutionary processes in real phylogenetic trees. The two most commonly used null models …