The National Microbiome Data Collaborative Data Portal: an integrated multi-omics microbiome data resource

EA Eloe-Fadrosh, F Ahmed, M Babinski… - Nucleic Acids …, 2022 - academic.oup.com
Abstract The National Microbiome Data Collaborative (NMDC) Data Portal (https://data.
microbiomedata. org) supports microbiome multi-omics data exploration and access through …

FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research

KJ van der Velde, G Singh, R Kaliyaperumal, XF Liao… - Scientific data, 2022 - nature.com
The genomes of thousands of individuals are profiled within Dutch healthcare and research
each year. However, this valuable genomic data, associated clinical data and consent are …

Community recommendations for geochemical data, services and analytical capabilities in the 21st century

M Klöcking, L Wyborn, KA Lehnert, B Ware… - … et Cosmochimica Acta, 2023 - Elsevier
The majority of geochemical and cosmochemical research is based upon observations and,
in particular, upon the acquisition, processing and interpretation of analytical data from …

Enabling FAIR data in Earth and environmental science with community-centric (meta) data reporting formats

R Crystal-Ornelas, C Varadharajan, D O'Ryan… - Scientific Data, 2022 - nature.com
Research can be more transparent and collaborative by using Findable, Accessible,
Interoperable, and Reusable (FAIR) principles to publish Earth and environmental science …

A guide to using GitHub for developing and versioning data standards and reporting formats

R Crystal‐Ornelas, C Varadharajan… - Earth and Space …, 2021 - Wiley Online Library
Data standardization combined with descriptive metadata facilitate data reuse, which is the
ultimate goal of the Findable, Accessible, Interoperable, and Reusable (FAIR) principles …

Towards globally unique identification of physical samples: Governance and technical implementation of the IGSN global sample number

J Klump, K Lehnert, D Ulbricht… - Data Science …, 2021 - gfzpublic.gfz-potsdam.de
Persistent unique identifiers (PID) are a critical element in digital research data infrastructure
to unambiguously identify, locate, and cite digital representations of a growing range of …

MetaCOXI: an integrated collection of metazoan mitochondrial cytochrome oxidase subunit-I DNA sequences

B Balech, A Sandionigi, M Marzano, G Pesole… - Database, 2022 - academic.oup.com
Nucleotide sequences reference collections or databases are fundamental components in
DNA barcoding and metabarcoding data analyses pipelines. In such analyses, the accurate …

[PDF][PDF] Biodiversity biobanks: a landscape analysis

C Corrales, S Luciano, JJ Astrin - ARPHA Preprints, 2023 - preprints.arphahub.com
Biobanks are curated collections of biological samples that are preserved at the molecular
level, usually frozen, along with associated data, and managed to high scientific standards …

[PDF][PDF] A choice of persistent identifier schemes for the Distributed System of Scientific Collections (DiSSCo)

A Hardisty, W Addink, F Glöckler, A Güntsch… - Research Ideas and …, 2021 - riojournal.com
Persistent identifiers (PID) to identify digital representations of physical specimens in natural
science collections (ie, digital specimens) unambiguously and uniquely on the Internet are …

MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment

A Simpson, EM Wood-Charlson, M Smith, BJ Koch… - …, 2024 - academic.oup.com
DNA/RNA-stable isotope probing (SIP) is a powerful tool to link in situ microbial activity to
sequencing data. Every SIP dataset captures distinct information about microbial community …