[HTML][HTML] Web resources for SARS-CoV-2 genomic database, annotation, analysis and variant tracking
The SARS-CoV-2 genomic data continue to grow, providing valuable information for
researchers and public health officials. Genomic analysis of these data sheds light on the …
researchers and public health officials. Genomic analysis of these data sheds light on the …
[HTML][HTML] Genomic surveillance of SARS-CoV-2 reveals highest severity and mortality of delta over other variants: evidence from Cameroon
J Fokam, RG Essomba, R Njouom, MCA Okomo… - Scientific Reports, 2023 - nature.com
While the SARS-CoV-2 dynamic has been described globally, there is a lack of data from
Sub-Saharan Africa. We herein report the dynamics of SARS-CoV-2 lineages from March …
Sub-Saharan Africa. We herein report the dynamics of SARS-CoV-2 lineages from March …
Case investigation and contact tracing in US state and local public health agencies: sustaining capacities and applying lessons learned from the COVID-19 pandemic …
A Woodward, C Rivers - Health security, 2023 - liebertpub.com
The COVID-19 pandemic illuminated the lack of resources available to US state and local
public health agencies to respond to large-scale health events. Two response activities that …
public health agencies to respond to large-scale health events. Two response activities that …
[HTML][HTML] Rural populations facilitated early SARS-CoV-2 evolution and transmission in Missouri, USA
CY Tang, T Li, TA Haynes, JA McElroy, D Ritter… - npj Viruses, 2023 - nature.com
Abstract In the United States, rural populations comprise 60 million individuals and suffered
from high COVID-19 disease burdens. Despite this, surveillance efforts are biased toward …
from high COVID-19 disease burdens. Despite this, surveillance efforts are biased toward …
[HTML][HTML] Implementation of California COVIDNet–a multi-sector collaboration for statewide SARS-CoV-2 genomic surveillance
DA Wadford, N Baumrind, EF Baylis, JM Bell… - Frontiers in Public …, 2023 - frontiersin.org
Introduction The SARS-CoV-2 pandemic represented a formidable scientific and
technological challenge to public health due to its rapid spread and evolution. To meet these …
technological challenge to public health due to its rapid spread and evolution. To meet these …
[HTML][HTML] A response playbook for early detection and population surveillance of new SARS-CoV-2 variants in a regional public health laboratory
Background Timely genomic surveillance is required to inform public health responses to
new SARS-CoV-2 variants. However, the processes involved in local genomic surveillance …
new SARS-CoV-2 variants. However, the processes involved in local genomic surveillance …
[HTML][HTML] Methods for sequencing the pandemic: benefits of rapid or high-throughput processing
ML Folkerts, D Lemmer, A Pfeiffer, D Vasquez… - …, 2021 - ncbi.nlm.nih.gov
Genomic epidemiology has proven successful for real-time and retrospective monitoring of
small and large-scale outbreaks. Here, we report two genomic sequencing and analysis …
small and large-scale outbreaks. Here, we report two genomic sequencing and analysis …
[HTML][HTML] SARS‐CoV‐2 Delta variant in Cartagena de Indias, Colombia, August 2021
S Loyola, J Torres‐Pacheco… - Health Science …, 2022 - ncbi.nlm.nih.gov
2. METHODS Participants were recruited by an ongoing surveillance study conducted by
Unidad de Investigación Molecular (UNIMOL) that enrolls individuals with acute respiratory …
Unidad de Investigación Molecular (UNIMOL) that enrolls individuals with acute respiratory …
[HTML][HTML] Comparative Analysis of Library Preparation Approaches for SARS-CoV-2 Genome Sequencing on the Illumina MiSeq Platform
A Gladkikh, E Klyuchnikova, P Pavlova… - International Journal of …, 2023 - mdpi.com
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been responsible for
over two years of the COVID-19 pandemic and a global health emergency. Genomic …
over two years of the COVID-19 pandemic and a global health emergency. Genomic …