The phylogenomic forest of bird trees contains a hard polytomy at the root of Neoaves

A Suh - Zoologica Scripta, 2016 - Wiley Online Library
Birds have arguably been the most intensely studied animal group for their phylogenetic
relationships. However, the recent advent of genome‐scale phylogenomics has made the …

Phylogeography of ticks (Acari: Ixodida)

L Beati, H Klompen - Annual review of entomology, 2019 - annualreviews.org
Improved understanding of tick phylogeny has allowed testing of some biogeographical
patterns. On the basis of both literature data and a meta-analysis of available sequence …

[HTML][HTML] Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle… - Genome biology, 2021 - Springer
Background Modern sequencing technologies should make the assembly of the relatively
small mitochondrial genomes an easy undertaking. However, few tools exist that address …

Paleogene fossil birds

G Mayr, Mayr - 2009 - Springer
The first edition of this book was written at a time when comprehensive analyses of
molecular sequence data just began to provide a robust framework for the interrelationships …

The performance of phylogenetic algorithms in estimating haplotype genealogies with migration

W Salzburger, GB Ewing, A Von Haeseler - Molecular ecology, 2011 - Wiley Online Library
Genealogies estimated from haplotypic genetic data play a prominent role in various
biological disciplines in general and in phylogenetics, population genetics and …

Evolution of modern birds revealed by mitogenomics: timing the radiation and origin of major orders

MA Pacheco, FU Battistuzzi, M Lentino… - Molecular Biology …, 2011 - academic.oup.com
Mitochondrial (mt) genes and genomes are among the major sources of data for
evolutionary studies in birds. This places mitogenomic studies in birds at the core of intense …

[HTML][HTML] Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

A Suh, M Paus, M Kiefmann, G Churakov… - Nature …, 2011 - nature.com
The relationships of passerines (such as the well-studied zebra finch) with non-passerine
birds is one of the great enigmas of avian phylogenetic research, because decades of …

[HTML][HTML] The erratic mitochondrial clock: variations of mutation rate, not population size, affect mtDNA diversity across birds and mammals

B Nabholz, S Glémin, N Galtier - BMC evolutionary biology, 2009 - Springer
Background During the last ten years, major advances have been made in characterizing
and understanding the evolution of mitochondrial DNA, the most popular marker of …

Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites

MJ Phillips, GC Gibb, EA Crimp, D Penny - Systematic biology, 2010 - academic.oup.com
Ratites are large, flightless birds and include the ostrich, rheas, kiwi, emu, and cassowaries,
along with extinct members, such as moa and elephant birds. Previous phylogenetic …

A multilocus molecular phylogeny of the parrots (Psittaciformes): support for a Gondwanan origin during the Cretaceous

TF Wright, EE Schirtzinger, T Matsumoto… - Molecular biology …, 2008 - academic.oup.com
The question of when modern birds (Neornithes) first diversified has generated much debate
among avian systematists. Fossil evidence generally supports a Tertiary diversification …