Abiotic stress responses in plants

H Zhang, J Zhu, Z Gong, JK Zhu - Nature Reviews Genetics, 2022 - nature.com
Plants cannot move, so they must endure abiotic stresses such as drought, salinity and
extreme temperatures. These stressors greatly limit the distribution of plants, alter their …

Alternative splicing control of abiotic stress responses

T Laloum, G Martín, P Duque - Trends in plant science, 2018 - cell.com
Alternative splicing, which generates multiple transcripts from the same gene, is an
important modulator of gene expression that can increase proteome diversity and regulate …

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CY Cheng, V Krishnakumar, AP Chan… - The Plant …, 2017 - Wiley Online Library
The flowering plant Arabidopsis thaliana is a dicot model organism for research in many
aspects of plant biology. A comprehensive annotation of its genome paves the way for …

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

International Wheat Genome Sequencing Consortium … - Science, 2014 - science.org
An ordered draft sequence of the 17-gigabase hexaploid bread wheat (Triticum aestivum)
genome has been produced by sequencing isolated chromosome arms. We have annotated …

A survey of the sorghum transcriptome using single-molecule long reads

SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …

Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome

B Chalhoub, F Denoeud, S Liu, IAP Parkin, H Tang… - science, 2014 - science.org
Oilseed rape (Brassica napus L.) was formed~ 7500 years ago by hybridization between B.
rapa and B. oleracea, followed by chromosome doubling, a process known as …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Widespread intron retention in mammals functionally tunes transcriptomes

U Braunschweig, NL Barbosa-Morais, Q Pan… - Genome …, 2014 - genome.cshlp.org
Alternative splicing (AS) of precursor RNAs is responsible for greatly expanding the
regulatory and functional capacity of eukaryotic genomes. Of the different classes of AS …

Splicing regulation by long noncoding RNAs

N Romero-Barrios, MF Legascue… - Nucleic acids …, 2018 - academic.oup.com
Massive high-throughput sequencing techniques allowed the identification of thousands of
noncoding RNAs (ncRNAs) and a plethora of different mRNA processing events occurring in …

Complexity of the alternative splicing landscape in plants

ASN Reddy, Y Marquez, M Kalyna, A Barta - The Plant Cell, 2013 - academic.oup.com
Alternative splicing (AS) of precursor mRNAs (pre-mRNAs) from multiexon genes allows
organisms to increase their coding potential and regulate gene expression through multiple …