Challenges and applications of large language models
Large Language Models (LLMs) went from non-existent to ubiquitous in the machine
learning discourse within a few years. Due to the fast pace of the field, it is difficult to identify …
learning discourse within a few years. Due to the fast pace of the field, it is difficult to identify …
Machine learning for functional protein design
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …
structure data have radically transformed computational protein design. New methods …
Convolutions are competitive with transformers for protein sequence pretraining
Pretrained protein sequence language models have been shown to improve the
performance of many prediction tasks and are now routinely integrated into bioinformatics …
performance of many prediction tasks and are now routinely integrated into bioinformatics …
Scientific large language models: A survey on biological & chemical domains
Large Language Models (LLMs) have emerged as a transformative power in enhancing
natural language comprehension, representing a significant stride toward artificial general …
natural language comprehension, representing a significant stride toward artificial general …
[HTML][HTML] Multimodal large language models in health care: Applications, challenges, and future outlook
In the complex and multidimensional field of medicine, multimodal data are prevalent and
crucial for informed clinical decisions. Multimodal data span a broad spectrum of data types …
crucial for informed clinical decisions. Multimodal data span a broad spectrum of data types …
Prot2text: Multimodal protein's function generation with gnns and transformers
H Abdine, M Chatzianastasis, C Bouyioukos… - Proceedings of the …, 2024 - ojs.aaai.org
In recent years, significant progress has been made in this field of protein function prediction
with the development of various machine-learning approaches. However, most existing …
with the development of various machine-learning approaches. However, most existing …
Biot5: Enriching cross-modal integration in biology with chemical knowledge and natural language associations
Recent advancements in biological research leverage the integration of molecules, proteins,
and natural language to enhance drug discovery. However, current models exhibit several …
and natural language to enhance drug discovery. However, current models exhibit several …
Prollama: A protein large language model for multi-task protein language processing
Abstract Large Language Models (LLMs), including GPT-x and LLaMA2, have achieved
remarkable performance in multiple Natural Language Processing (NLP) tasks. Under the …
remarkable performance in multiple Natural Language Processing (NLP) tasks. Under the …
MatText: Do Language Models Need More than Text & Scale for Materials Modeling?
Effectively representing materials as text has the potential to leverage the vast
advancements of large language models (LLMs) for discovering new materials. While LLMs …
advancements of large language models (LLMs) for discovering new materials. While LLMs …
A systematic survey in geometric deep learning for structure-based drug design
Structure-based drug design (SBDD) utilizes the three-dimensional geometry of proteins to
identify potential drug candidates. Traditional methods, grounded in physicochemical …
identify potential drug candidates. Traditional methods, grounded in physicochemical …