Root of the tree: the significance, evolution, and origins of the ribosome
The ribosome is an ancient molecular fossil that provides a telescope to the origins of life.
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …
Made from RNA and protein, the ribosome translates mRNA to coded protein in all living …
The world of subinhibitory antibiotic concentrations
Although antibiotics have long been known to have multiple effects on bacterial cells at low
concentrations, it is only with the advent of genome transcription analyses that these …
concentrations, it is only with the advent of genome transcription analyses that these …
Structure and variation of the mitochondrial genome of fishes
Background The mitochondrial (mt) genome has been used as an effective tool for
phylogenetic and population genetic analyses in vertebrates. However, the structure and …
phylogenetic and population genetic analyses in vertebrates. However, the structure and …
DOCK 6: Combining techniques to model RNA–small molecule complexes
PT Lang, SR Brozell, S Mukherjee, EF Pettersen… - Rna, 2009 - rnajournal.cshlp.org
With an increasing interest in RNA therapeutics and for targeting RNA to treat disease, there
is a need for the tools used in protein-based drug design, particularly DOCKing algorithms …
is a need for the tools used in protein-based drug design, particularly DOCKing algorithms …
Structures of the Escherichia coli ribosome with antibiotics bound near the peptidyl transferase center explain spectra of drug action
Differences between the structures of bacterial, archaeal, and eukaryotic ribosomes account
for the selective action of antibiotics. Even minor variations in the structure of ribosomes of …
for the selective action of antibiotics. Even minor variations in the structure of ribosomes of …
The A–Z of bacterial translation inhibitors
DN Wilson - Critical reviews in biochemistry and molecular biology, 2009 - Taylor & Francis
Protein synthesis is one of the major targets in the cell for antibiotics. This review endeavors
to provide a comprehensive “post-ribosome structure” A–Z of the huge diversity of antibiotics …
to provide a comprehensive “post-ribosome structure” A–Z of the huge diversity of antibiotics …
Expanding the chemistry of DNA for in vitro selection
JD Vaught, C Bock, J Carter, T Fitzwater… - Journal of the …, 2010 - ACS Publications
Six new 5-position modified dUTP derivatives connected by a unique amide linkage were
synthesized and tested for compatibility with the enzymatic steps of in vitro selection. Six …
synthesized and tested for compatibility with the enzymatic steps of in vitro selection. Six …
A guide to naming human non‐coding RNA genes
Research on non‐coding RNA (nc RNA) is a rapidly expanding field. Providing an official
gene symbol and name to nc RNA genes brings order to otherwise potential chaos as it …
gene symbol and name to nc RNA genes brings order to otherwise potential chaos as it …
RAPP-containing arrest peptides induce translational stalling by short circuiting the ribosomal peptidyltransferase activity
M Morici, S Gabrielli, K Fujiwara, H Paternoga… - Nature …, 2024 - nature.com
Arrest peptides containing RAPP (ArgAlaProPro) motifs have been discovered in both Gram-
positive and Gram-negative bacteria, where they are thought to regulate expression of …
positive and Gram-negative bacteria, where they are thought to regulate expression of …
Oxidative stress damages rRNA inside the ribosome and differentially affects the catalytic center
J Willi, P Küpfer, D Evéquoz, G Fernandez… - Nucleic acids …, 2018 - academic.oup.com
Intracellular levels of reactive oxygen species (ROS) increase as a consequence of
oxidative stress and represent a major source of damage to biomolecules. Due to its high …
oxidative stress and represent a major source of damage to biomolecules. Due to its high …