A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
Probiotics, gut microbiota, and their influence on host health and disease
B Sánchez, S Delgado… - Molecular nutrition & …, 2017 - Wiley Online Library
The gastrointestinal tract of mammals hosts a high and diverse number of different
microorganisms, known as intestinal microbiota. Many probiotics were originally isolated …
microorganisms, known as intestinal microbiota. Many probiotics were originally isolated …
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
A system-wide understanding of cellular function requires knowledge of all functional
interactions between the expressed proteins. The STRING database aims to collect and …
interactions between the expressed proteins. The STRING database aims to collect and …
[HTML][HTML] The phyllosphere microbiome shifts toward combating melanose pathogen
Background Plants can recruit beneficial microbes to enhance their ability to defend against
pathogens. However, in contrast to the intensively studied roles of the rhizosphere …
pathogens. However, in contrast to the intensively studied roles of the rhizosphere …
[HTML][HTML] A guide to conquer the biological network era using graph theory
Networks are one of the most common ways to represent biological systems as complex sets
of binary interactions or relations between different bioentities. In this article, we discuss the …
of binary interactions or relations between different bioentities. In this article, we discuss the …
PhosphoSitePlus, 2014: mutations, PTMs and recalibrations
PV Hornbeck, B Zhang, B Murray… - Nucleic acids …, 2015 - academic.oup.com
Abstract PhosphoSitePlus®(PSP, http://www. phosphosite. org/), a knowledgebase
dedicated to mammalian post-translational modifications (PTMs), contains over 330 000 non …
dedicated to mammalian post-translational modifications (PTMs), contains over 330 000 non …
Identification of 153 new loci associated with heel bone mineral density and functional involvement of GPC6 in osteoporosis
Osteoporosis is a common disease diagnosed primarily by measurement of bone mineral
density (BMD). We undertook a genome-wide association study (GWAS) in 142,487 …
density (BMD). We undertook a genome-wide association study (GWAS) in 142,487 …
New genetic loci link adipose and insulin biology to body fat distribution
D Shungin, TW Winkler, DC Croteau-Chonka… - Nature, 2015 - nature.com
Body fat distribution is a heritable trait and a well-established predictor of adverse metabolic
outcomes, independent of overall adiposity. To increase our understanding of the genetic …
outcomes, independent of overall adiposity. To increase our understanding of the genetic …
FunRich: An open access standalone functional enrichment and interaction network analysis tool
As high‐throughput techniques including proteomics become more accessible to individual
laboratories, there is an urgent need for a user‐friendly bioinformatics analysis system …
laboratories, there is an urgent need for a user‐friendly bioinformatics analysis system …
The IBD interactome: an integrated view of aetiology, pathogenesis and therapy
HSP De Souza, C Fiocchi, D Iliopoulos - … Reviews Gastroenterology & …, 2017 - nature.com
Crohn's disease and ulcerative colitis are prototypical complex diseases characterized by
chronic and heterogeneous manifestations, induced by interacting environmental, genomic …
chronic and heterogeneous manifestations, induced by interacting environmental, genomic …