Broken detailed balance and non-equilibrium dynamics in living systems: a review

FS Gnesotto, F Mura, J Gladrow… - Reports on Progress in …, 2018 - iopscience.iop.org
Living systems operate far from thermodynamic equilibrium. Enzymatic activity can induce
broken detailed balance at the molecular scale. This molecular scale breaking of detailed …

Fluid mechanics of microrheology

TM Squires, TG Mason - Annual review of fluid mechanics, 2010 - annualreviews.org
In microrheology, the local and bulk mechanical properties of a complex fluid are extracted
from the motion of probe particles embedded within it. In passive microrheology, particles …

Rheology of soft materials

DTN Chen, Q Wen, PA Janmey… - Annu. Rev. Condens …, 2010 - annualreviews.org
Research on soft materials, including colloidal suspensions, glasses, pastes, emulsions,
foams, polymer networks, liquid crystals, granular materials, and cells, has captured the …

Convolutional neural networks automate detection for tracking of submicron-scale particles in 2D and 3D

JM Newby, AM Schaefer, PT Lee… - Proceedings of the …, 2018 - National Acad Sciences
Particle tracking is a powerful biophysical tool that requires conversion of large video files
into position time series, ie, traces of the species of interest for data analysis. Current …

Hopping diffusion of nanoparticles in polymer matrices

LH Cai, S Panyukov, M Rubinstein - Macromolecules, 2015 - ACS Publications
We propose a hopping mechanism for diffusion of large nonsticky nanoparticles subjected to
topological constraints in both unentangled and entangled polymer solids (networks and …

Mobility of nonsticky nanoparticles in polymer liquids

LH Cai, S Panyukov, M Rubinstein - Macromolecules, 2011 - ACS Publications
We use scaling theory to derive the time dependence of the mean-square displacement⟨ Δ r
2⟩ of a probe nanoparticle of size d experiencing thermal motion in polymer solutions and …

Microrheology of complex fluids

TA Waigh - Reports on progress in physics, 2005 - iopscience.iop.org
The field of microrheology is concerned with how materials store and dissipate mechanical
energy as a function of length scale. Recent developments in the theory and instrumentation …

[HTML][HTML] Static and dynamic errors in particle tracking microrheology

T Savin, PS Doyle - Biophysical journal, 2005 - cell.com
Particle tracking techniques are often used to assess the local mechanical properties of cells
and biological fluids. The extracted trajectories are exploited to compute the mean-squared …

Hard and soft colloids at fluid interfaces: Adsorption, interactions, assembly & rheology

OS Deshmukh, D van den Ende, MC Stuart… - Advances in colloid and …, 2015 - Elsevier
Soft microgel particles inherently possess qualities of both polymers as well as particles. We
review the similarities and differences between soft microgel particles and stiff colloids at …

Two-component protein-engineered physical hydrogels for cell encapsulation

CTS Wong Po Foo, JS Lee… - Proceedings of the …, 2009 - National Acad Sciences
Current protocols to encapsulate cells within physical hydrogels require substantial changes
in environmental conditions (pH, temperature, or ionic strength) to initiate gelation. These …